RNA id: XM_034312314.1


Basic Information

Item Value
RNA id XM_034312314.1
length 2050
RNA type mRNA
GC content 0.50
exon number 5
gene id zfand5b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24599862 ~ 24658701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatCAGTGCCAGGCTTGTTGTGAAACACACCTCATGATGATGGATCTCGGCTCGACCCTCTCAGGCTCGGAACAGCGCGTCTCCTGTTTGTTCTCGGCTGATCGTCACCTCGCTTGCGTGTTTACGTGTTTTCGGGTCGTactGAGCCATGGCCCAGGAGACGAACCAGAGCCCCGTGCCCATGCTCTGCACCACCGGCTGTGGGTTCTACGGGAACCCCAGGACTAACGGCATGTGTTCGGTGTGTTATAAGGAACATCTCTCCAGACAGAACAGCGGAGGTGTGAGTCCTCTCAGTAACATGGGTTCGAGCAGTGTAACCAGTAGTCCCACCTCCGAGGCGTCTGCCATCCAGATCATCGAGGCCAGTTTAAACACTTCTGCGAGTGACGCCGAGTCGCCCGCCGGGGCCGCCGCGGCACTTCCTGTTACGCAGCAGATGACTGAGATGAGCATTTCTTGCGAAGAGGAAGTGGCAACGCCTAAAGTAGAAATTCCTGAACCTGTTGTAACTCAGCCCACggcttcttcttcctcttcggTGAACACGGCGGTCAGCGCCGAGACCAAAACCCCCGACGCCCCCAAACCCAAGAAAAACCGCTGCTTCATGTGCCGCAAGAAGGTCGGCCTTACAGGGTTCGACTGTCGCTGTGGAAACCTCTTCTGTGGACTTCACCGTTACTCAGACAAGCACAACTGCCCCTACGACTACAAAGCCGAGGCCGCGGCCAAGATCCGCAAAGAGAACCCCGTGGTGGTGGCCGACAAGATCCAGAGAATATAGATCACCCGCGCGTCTCTTTggctttgacctttgaccctcaTTTCCGGGAGAGAGATAACgtgtaaaaagataaaaaaggaCTCGCACTTGACCTGCGATCTAAAggactatttttatttttaatgacgtTGATCTTGTTTTTCAGCCGATGCATGAGTGGAGtgatctggtttttttttgtttttgtcctcgGTGTATGATGGAGTTTAAAAGCGGGGGAAAGTGGGCGGGGTTTAGATCACATCTCCTCGTGTGCGGTTGGTGTGGTGttggggggaggggggtgtTGTGTTAAAGGCGGACCGTCTTTGTGATTGTCGAATCGTCGTGATTGTGCGCGTCTCGTGTCTCAGCGTGGAGGACGGACACGTCGTAGCCTGCGGGACTTCACACGACTGTTACGGCTCTGACTCGAGCGCCGTCAGGGCAGCAGTGCATGGCTGGCTCATGTagcacaaagaaaaaacaaaacacaatggacgctctcttcttctcttctcttcttcttttcctctagTTTGAAGAGTTCACTGTCTCCCCATGGCTCGTGGCATGACTCCCACAACTCTAGAGTTAGCCTTCACAGCGTTAGCTTCGTTTATTCGCCCGTGCCTCGGACCGTCCCACAGCagactgtttctctttcttttcttttcctctttgttttGGAGTGAattatttttccttctgttcGAGTGACACTTCTATCCCGGTTGGTAAAAGTTTTAGTGAAGCACAGACGGATTAAATGCTAAGGCTTTGTATTCCTGCGTGTTGGAGTTTTAGCGGGCGGCGGGATTAAAGGGTGACCTGCATGGCTAGTGAAATAACTACTAAAGTACGTTTAGGTTTTTAACAGCTACCTGCTCATAGgccttgttttttaattaataatccaCGTCTGTACTgaatgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagggagaGTCACATGGTGCTGAGTGTCATGCAGTGTTCCCACTGTGGTGTGAAGGGATGCTTGAGTGTTAGTGTGAAATATtcagttcattatttttgtgtgtgtgtgtgtgtgtgtgtctctgcacaTTGGCGTTTCTGTACGAGACTCGTTCAGTTACGCAGTAAAACTGTCGTCTGTCGTTTCAGTTCTGCGGTTTGTACAAGCGAACCccttattatatttattatatgtattgCGCATCTAATCTTGTTACCCAACATTACAAAATTGtatcatgtaaataaaattatgtacAGAGATCTAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325407 lncRNA upstream 2450 24651750 ~ 24652197 (+) True G274653
TU325400 lncRNA upstream 71369 24582981 ~ 24583278 (+) True G274646
TU325393 lncRNA upstream 116911 24537130 ~ 24537736 (+) True G274639
TU325332 lncRNA upstream 156005 24495910 ~ 24498642 (+) False trappc13
TU325331 lncRNA upstream 156120 24495910 ~ 24498527 (+) False trappc13
TU325417 lncRNA downstream 22762 24681463 ~ 24682939 (+) True G274662
TU325454 lncRNA downstream 96481 24755182 ~ 24755384 (+) True G274696
TU325470 lncRNA downstream 120360 24779061 ~ 24779322 (+) True G274710
TU325474 lncRNA downstream 124195 24782896 ~ 24783522 (+) True G274714
TU325464 lncRNA downstream 126098 24784799 ~ 24795110 (+) True G274704
XM_034312379.1 mRNA upstream 15005 24585517 ~ 24639642 (+) True erbin
XM_034312566.1 mRNA upstream 129424 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA upstream 129424 24511482 ~ 24525223 (+) False nln
XM_034312920.1 mRNA upstream 157405 24480599 ~ 24497242 (+) False trappc13
XM_026911826.2 mRNA downstream 60028 24718729 ~ 24733547 (+) True apba1b
TU325389 other upstream 67095 24529978 ~ 24587552 (+) False erbin
TU325154 other upstream 425969 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 550052 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1294144 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1380477 23265453 ~ 23274170 (+) False rc3h2

Expression Profile