RNA id: TU325464


Basic Information

Item Value
RNA id TU325464
length 1402
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G274704
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24784799 ~ 24808503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAGCGGGTTTGCGAGCgattttcaaaacttttttccttaagtgtgttttgttaaaaattaagAGTGGATGGTTTAGGTGTTGGGTggttgtgagagtgtgtgtgggtgtttgggtgtgtgtgcgtgtgtgtgtgcgtgcgtgaggGCAGTAAAGAGTGTTCATGTGCAGAGCTTCTGTCTGTAAAGGagaaattttaaattgaaacacatttcagttttcatttcttaTGAAACAAATCTCTGGCCACATTTTCAGATTATTCTCCACTGTGACcagtcatctgtgtgtgtgtgtgtgtgtgTGGGGGTTTGGGGGGGTTAATATCACATGCTTTACTGGTGACCACAATAAACTGACTGGCTATGTGGATAATGCTAACAAAGTTTCCATagcaaaatcaaaataaataaaaaacaaacaaacaaaaacaaaccgtTGTAGCGTAAATCGGTGGCGGAGTTTGGAGCTGTTTCCATGGTGATATCATTCGGGCGACCAAAAGGTACAGTATGATCACATACATCATGGTTACCCAATGTgttaaagacacacccacctcCAGTTACATAACAgaccccccccaaaaaaataaaataaaataaaaaaaaaaccacaggtACATACAACATAATGAATAACAATGGGGAGTCCTGAAGGTGGAGAtgtgctctaacacacacctcagtgaaCAACACACAATCCTCAggaaagaaacaggaagtggataCCTCACActctgctagctagctaacaggctagcATTCGTGCGCAGTGCAGAGGAAAAACACAGTGGTGATTAGTGTGcaagtggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgagagtgaaccacatgtgtgtgtgtggatgtgtttaCCACCATGTCCTGTCATCACTTCCTGCCTAACAACACAGGGCGTGGCCTAGAGCTGACCGACATCACTGGAGTGGCAAtaacacccctcacacacacaaacacacACACACAGACAAGCTGAAGGAcataagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagatcagaactGCACAGACACTCCCTATCAGCCGCAGTGTCAGAGCTGGAGGGGGCGGGGCATGACTGAAGCGATGGGCGGGGCTTATTAGAAGGTCTTCCTGTGAATGGCACGTGCTCGATCCTCTTCATACTCTTTCTTAGAAACCCACATCTTCTTAAAGGTGTCCAATGAAGCCAGGATAGagccactgtaacacacacacacacacacacacacacacacacacagagtgttaggaggtgtgtgtattacacacacgcagacacaatTCTCTCCAAATTCTTGTGCAAATGCAAAGAAATATACATAttcacaggaagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325474 lncRNA upstream 1277 24782896 ~ 24783522 (+) True G274714
TU325470 lncRNA upstream 5477 24779061 ~ 24779322 (+) True G274710
TU325454 lncRNA upstream 29415 24755182 ~ 24755384 (+) True G274696
TU325417 lncRNA upstream 101860 24681463 ~ 24682939 (+) True G274662
TU325402 lncRNA upstream 126104 24599862 ~ 24658695 (+) False zfand5b
XM_026911826.2 mRNA upstream 51252 24718729 ~ 24733547 (+) True apba1b
XM_034312313.1 mRNA upstream 126098 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA upstream 126098 24654647 ~ 24658701 (+) False zfand5b
XM_034312379.1 mRNA upstream 145157 24585517 ~ 24639642 (+) True erbin
XM_034312565.1 mRNA upstream 259576 24511482 ~ 24525223 (+) False nln
TU325389 other upstream 197247 24529978 ~ 24587552 (+) False erbin
TU325154 other upstream 556121 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 680204 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1424296 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1510629 23265453 ~ 23274170 (+) False rc3h2

Expression Profile