RNA id: TU325470


Basic Information

Item Value
RNA id TU325470
length 262
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G274710
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24779061 ~ 24779322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttatcttgttttgtttttttggggtttaaTTTATCACTTATTTggtttagttatttatttatttttgaagaaaaacaccGGTGTAAGTGCACTGATTGATAAGGGGAGCCATGGCGTCTCTCTCAGGCGAGGGATCGCCAGGGCTCTCTATCAGGAACGGATGTAAAGTTTTCTCGGATCAAGCGTTTACGGTGGAAGACGTGCTTCTGGCAATGGGCGAGATTGTAGGGCATGAAAATATAGCATCGGCCTCCAGAAT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325454 lncRNA upstream 23677 24755182 ~ 24755384 (+) True G274696
TU325417 lncRNA upstream 96122 24681463 ~ 24682939 (+) True G274662
TU325402 lncRNA upstream 120366 24599862 ~ 24658695 (+) False zfand5b
TU325407 lncRNA upstream 126864 24651750 ~ 24652197 (+) True G274653
TU325400 lncRNA upstream 195783 24582981 ~ 24583278 (+) True G274646
TU325474 lncRNA downstream 3574 24782896 ~ 24783522 (+) True G274714
TU325464 lncRNA downstream 5477 24784799 ~ 24795110 (+) True G274704
TU325462 lncRNA downstream 14231 24793553 ~ 24808503 (+) False G274704
XM_026911826.2 mRNA upstream 45514 24718729 ~ 24733547 (+) True apba1b
XM_034312313.1 mRNA upstream 120360 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA upstream 120360 24654647 ~ 24658701 (+) False zfand5b
XM_034312379.1 mRNA upstream 139419 24585517 ~ 24639642 (+) True erbin
XM_034312565.1 mRNA upstream 253838 24511482 ~ 24525223 (+) False nln
TU325389 other upstream 191509 24529978 ~ 24587552 (+) False erbin
TU325154 other upstream 550383 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 674466 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1418558 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1504891 23265453 ~ 23274170 (+) False rc3h2

Expression Profile