RNA id: TU325589


Basic Information

Item Value
RNA id TU325589
length 1224
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G274808
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24596220 ~ 24678758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacacacacacacacacacacacaaaataatgaactgaATATTTCACACTAACACTCAAGCATCCCTTCACACCACAGTGGGAACACTGCATGACACTCAGCACCATGTGACtctccctccacacacacacacacacacacacacacacacacacacagcaacattcAGTACAGACGtggattattaattaaaaaacaaggcCTATGAGCAGGTAGCTGTTAAAAACCTAAACGTACTTTAGTAGTTATTTCACTAGCCATGCAGGTCACCCTTTAATCCCGCCGCCCGCTAAAACTCCAACACGCAGGAATACAAAGCCTTAGCATTTAATCCGTCTGTGCTTCACTAAAACTTTTACCAACCGGGATAGAAGTGTCACTCgaacagaaggaaaaataatTCACTCCaaaacaaagaggaaaagaaaagaaagagaaacagtctGCTGTGGGACGGTCCGAGGCACGGGCGAATAAACGAAGCTAACGCTGTGAAGGCTAACTCTAGAGTTGTGGGAGTCATGCCACGAGCCATGGGGAGACAGTGAACTCTTCAAActagaggaaaagaagaagagaagagaagaagagagcgtccattgtgttttgttttttctttgtgctACATGAGCCAGCCATGCACTGCTGCCCTGACGGCGCTCGAGTCAGAGCCGTAACAGTCGTGTGAAGTCCCGCAGGCTACGACGTGTCCGTCCTCCACGCTGAGACACGAGACGCGCACAATCACGACGATTCGACAATCACAAAGACGGTCCGCCTTTAACACAacacccccctccccccaaCACCACACCAACCGCACACGAGGAGATGTGATCTAAACCCCGCCCACTTTCCCCCGCTTTTAAACTCCATCATACACcgaggacaaaaacaaaaaaaaaccagatcaCTCCACTCATGCATCGGCTGAAAAACAAGATCAacgtcattaaaaataaaaatagtccTTTAGATCGCAGGTCAAGTGCGAGtccttttttatctttttacacGTTATCTCTCTCCCGGAAAtgagggtcaaaggtcaaagccAAAGAGACGCGCGGGTGATCTATATTCTCTGGATCTTGTCGGCCACCACCACGGGGTTCTCTTTGCGGATCTTGGCCGCGGCCTCGGCTTTGTAGTCGTAGGGGCAGTTGTGCTTGTCTGAGTAACGGTGAAGTCCACAGAAGAGGTTTCCACAGCGACAGTCGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325551 lncRNA downstream 5617 24513288 ~ 24651673 (-) True G274781
TU325634 lncRNA downstream 19860 24636900 ~ 24637430 (-) True G274833
TU325607 lncRNA downstream 39586 24567980 ~ 24617704 (-) True G274810
TU325610 lncRNA downstream 50374 24564642 ~ 24606916 (-) False G274810
TU325619 lncRNA downstream 65330 24591240 ~ 24591960 (-) True G274819
TU325639 lncRNA upstream 18068 24694573 ~ 24696111 (-) True G274837
TU325645 lncRNA upstream 42426 24718931 ~ 24719131 (-) True G274841
TU325669 lncRNA upstream 73140 24749645 ~ 24749854 (-) True G274856
TU325670 lncRNA upstream 78675 24755180 ~ 24755382 (-) True G274857
TU325671 lncRNA upstream 103614 24780119 ~ 24780386 (-) True G274858
XM_026942651.2 mRNA downstream 147730 24500862 ~ 24509560 (-) False sgtb
XM_026942652.2 mRNA downstream 147810 24500862 ~ 24509480 (-) False sgtb
XM_026942649.2 mRNA downstream 147912 24500862 ~ 24509378 (-) False sgtb
XM_026942650.2 mRNA downstream 148844 24500862 ~ 24508446 (-) True sgtb
XM_034312585.1 mRNA downstream 180214 24465097 ~ 24477076 (-) True trim23
XM_034312447.1 mRNA upstream 22286 24698791 ~ 24718235 (-) True mamdc2b
XM_034312575.1 mRNA upstream 57043 24733548 ~ 24749451 (-) True tjp2a
XM_026911830.2 mRNA upstream 84711 24761216 ~ 24777827 (-) True pip5k1ba
XM_034312576.1 mRNA upstream 117049 24793554 ~ 24797730 (-) True actr1
XM_034312377.1 mRNA upstream 129917 24806422 ~ 24808492 (-) True zgc:86599
TU325248 other downstream 356286 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 403984 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 794022 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 855006 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3450120 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile