RNA id: TU325672


Basic Information

Item Value
RNA id TU325672
length 715
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G274859
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24780961 ~ 24781675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGACATAAACCGGGATCTTATCAGGGCACCTTTAGCCCGCACTTGCAACAAATGTTCTAAATCTTGTTTCTTTTCACATAAAATGTCAGCTGAAGAAGAATCGGAGTTCTGAATCATACCAGATGTGATGTGTAAGATCTCTTGTTCTATTTCagcaattttttgttttatttttcttgttgaaAGGCACGTATACTGCTgacaaaaaatttttatttgcgTTTTTCCTATTTCCCACCACTGTATTACAGTCTCAAATTCCTTTTTCTTAAAACGCCAGTCATTCCAAAACAGTTCAAATTTTTCATAaaactctttttctttcagcaaTGCAATGTTAAATTTCCAATAAGGActtttaaattcagattgtgTCAAAGCAACATTGACTGTAATAAAATGGTGATCAGATAAACAACATGGAGAAATATTACAACCCGTTATTCTATTATTTTCAGCACGCTGGACATAAAACCTGTCCAGTCTTGCTATACTTATCATTCCCTGTGAAACCTTTGTCCATGTATATTGTTTCATCTCTTTATTCCTATCTCTCCAAACATCTACCAAATCATTCTGAGTTATGAAGCTTTTTAAGAAAGAAGCTGATACAGGATGTGGTTCCTCATTATTTCTGTCTAAAAGAAAATTAAGAGTACAGTTCCAGTCCCCACCAATGATTAAAACACCATCCAAAGTATAGTCTTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325671 lncRNA downstream 575 24780119 ~ 24780386 (-) True G274858
TU325670 lncRNA downstream 25579 24755180 ~ 24755382 (-) True G274857
TU325669 lncRNA downstream 31107 24749645 ~ 24749854 (-) True G274856
TU325645 lncRNA downstream 61830 24718931 ~ 24719131 (-) True G274841
TU325639 lncRNA downstream 84850 24694573 ~ 24696111 (-) True G274837
TU325666 lncRNA upstream 17782 24799457 ~ 24803481 (-) True G274853
XM_026911830.2 mRNA downstream 3134 24761216 ~ 24777827 (-) True pip5k1ba
XM_034312575.1 mRNA downstream 31510 24733548 ~ 24749451 (-) True tjp2a
XM_034312447.1 mRNA downstream 62726 24698791 ~ 24718235 (-) True mamdc2b
XM_034312446.1 mRNA downstream 83109 24658808 ~ 24697852 (-) True smc5
XM_026942650.2 mRNA downstream 272515 24500862 ~ 24508446 (-) True sgtb
XM_034312576.1 mRNA upstream 11879 24793554 ~ 24797730 (-) True actr1
XM_034312377.1 mRNA upstream 24747 24806422 ~ 24808492 (-) True zgc:86599
XM_026911816.2 mRNA upstream 29128 24810803 ~ 24844734 (-) False LOC113525332
XM_026911817.2 mRNA upstream 29128 24810803 ~ 24827597 (-) True LOC113525332
XM_034312448.1 mRNA upstream 90375 24872050 ~ 24873662 (-) True LOC117599334
TU325248 other downstream 479957 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 527655 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 917693 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 978677 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3573791 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU232171 True 2131 lncRNA 0.33 1 CI01000048 654200 ~ 656330 (+)