Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026910298.2 |
| length | 1084 |
| RNA type | mRNA |
| GC content | 0.62 |
| exon number | 3 |
| gene id | tlx3b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 1450158 ~ 1461224 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K15607 | TLX3, HOX11L2; T-cell leukemia homeobox protein 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU309950 | lncRNA | upstream | 116172 | 1333782 ~ 1333986 (+) | True | G261585 |
| TU309909 | lncRNA | upstream | 186018 | 1263307 ~ 1264140 (+) | True | G261544 |
| TU309899 | lncRNA | upstream | 201477 | 1241824 ~ 1248681 (+) | True | G261534 |
| TU309901 | lncRNA | upstream | 203547 | 1245800 ~ 1246611 (+) | True | G261536 |
| TU309871 | lncRNA | upstream | 235662 | 1203000 ~ 1214496 (+) | True | G261510 |
| TU309969 | lncRNA | downstream | 4344 | 1465568 ~ 1471657 (+) | False | LOC113524197 |
| TU309972 | lncRNA | downstream | 4344 | 1465568 ~ 1470922 (+) | True | LOC113524197 |
| XR_003402517.2 | lncRNA | downstream | 9397 | 1470621 ~ 1510087 (+) | False | LOC113524197 |
| TU310010 | lncRNA | downstream | 135538 | 1596762 ~ 1610711 (+) | True | G261634 |
| TU310014 | lncRNA | downstream | 139247 | 1600471 ~ 1615601 (+) | True | G261638 |
| XM_026910312.2 | mRNA | upstream | 26693 | 1420371 ~ 1423465 (+) | True | LOC113524161 |
| XM_034312304.1 | mRNA | upstream | 30669 | 1414504 ~ 1419489 (+) | True | ponzr2 |
| XM_034312305.1 | mRNA | upstream | 30669 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XM_026910308.2 | mRNA | upstream | 31296 | 1411986 ~ 1418862 (+) | False | ponzr2 |
| XM_026910309.2 | mRNA | upstream | 31296 | 1414504 ~ 1418862 (+) | False | ponzr2 |
| XM_034312431.1 | mRNA | downstream | 51340 | 1512564 ~ 1523146 (+) | True | LOC113524165 |
| XM_026910354.2 | mRNA | downstream | 91044 | 1552268 ~ 1553689 (+) | True | LOC113524200 |
| XM_034312266.1 | mRNA | downstream | 351375 | 1812599 ~ 1826322 (+) | False | fgf18b |
| XM_034312267.1 | mRNA | downstream | 351375 | 1812599 ~ 1826322 (+) | False | fgf18b |
| XM_026944035.2 | mRNA | downstream | 351475 | 1812699 ~ 1826322 (+) | False | fgf18b |
| XR_004579765.1 | other | upstream | 30669 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XR_004579764.1 | other | upstream | 30723 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU309863 | other | upstream | 213026 | 1205991 ~ 1237132 (+) | True | G261503 |
| TU309774 | other | upstream | 337880 | 1101789 ~ 1112278 (+) | True | vamp2 |
| trnal-aag_10 | other | upstream | 350705 | 1099372 ~ 1099453 (+) | True | trnal-aag_10 |
| XR_004579857.1 | other | downstream | 882437 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| TU311007 | other | downstream | 1334324 | 2795548 ~ 2817258 (+) | False | pcp4a |
| TU312620 | other | downstream | 3616657 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU313203 | other | downstream | 4547576 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU313925 | other | downstream | 5605647 | 7066871 ~ 7082441 (+) | True | G264948 |
