RNA id: XM_026910326.2


Basic Information

Item Value
RNA id XM_026910326.2
length 2862
RNA type mRNA
GC content 0.51
exon number 4
gene id kctd7
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 615830 ~ 621347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggcctgatGTGTCTGATGAGGCCGCAGCTGGAGCGTGATGTGAGGCAgaaactgtgtgtttctctttctctttctctttgtgtgtttatCTTTCCACGGTGACATTCCGGACTAAAccccgccacacacacacccacacacacacacccacacacacacacgtccggTTCCAGTCGGGTTCTTTAGTGTGCATGCAGCAGAATGGAGCAGGCGAGACGCCGAATGGAGACGCAGGACAGCTCTCCTTCAGCACCGCCAGCTGCTCGGCTGCTTTGCTGCCTGCtgcctcttcatcatcatcatcatcatcatcatcatcctcatcatcatcaacatcatcctcatcatcctcagcctcatcatcatcctcatcacgGCTGAGGAGGCTCACCCAGGAGGGCCGCGGAGTTCCTCCTCAGCCCACAGTCATGGTCGTGTTCTCGGCTGCGAGGGACAGCGAGCCAGCAGGAGATTCCGCCATGTCCAGGTCCGAGGAGGAGAAACGCAAAGCAGCCGTTTGCACTCCGAGCAGAAGCTTAGCCAAACCCCTGCGCACCTTGAACGCACCCCAGGAGTTTCCCGAGGTGATTCCTCTGAACGTAGGAGGGACGTACTTCACCACACGTCTGTCCACGCTGCGCCGGTACGAGGACACCATGCTGGCCGCCATGTTCAGCGGACGCCATCACATTCCCCGAGACGCTGAGGGACGATACTTCATCGACCGAGACGGAGCTTATTTTGGGGACATCCTGAACTTCCTGCGTGAGGGTGAGCTTCCTCAGAGGGACCGGGTTCGGGCCGTACACAGAGAGGCTCAGTATTACTCCATCGGGCCGCTGTTAGAGAGTCTGGAGGACAGACAGCCTCTGACCGGGGAGAAGGTTCGCCAGGCGTTCCTCGACCTCCTGCCTTATTAtaaagAGAATCTGGAGCGCATCGTGGAGATAGCGAAGCTGCGAGCCATGCAGAGGAAGGCTCGCTTCGCCAAGCTGAAGATCTGCGTGTATAAGGAGGAGATGCCGATCACGCCGTACGAGCGTCCGCTCTTCAACTCGCTGCGCTTCGAGCGCTCCGAGAGCGAGGCCAAGCTGTTCGAGCACCACTGCGAGGTGGACGTGTCGTTCGGGCCGTGGGAAGCCGTGGCCGACGTGTACGACCTGCTGCACTGCATCGTGAGCGACCTGGCCGAGCGCGGCATCACCGTCGACCAGCAGTGCATCGGAGTGTGTGACAAACACCTCATCAACCACTACTACTGCAAGAGGCCCATCTACGAGTTCAAGATCACCTGGTGGTGAAGGAACGGGTTCTGCTTCTGGTCAGAGAGCTTAGGACGGTGGTCCAGGTTCCTTCGGGAGATTGGAAGCGGGTCGCGTCTGTAGCACTAAACCTAAActatttactcatttaagaTCACATAGTGGTGAAGGACTGGTACTGAAACAGGTCCAGGTTCTTTTAGGAGCCTTCAGTTACTGTTGCAGGTCCGGGTTCCTCTAAGAGCTTGCATGATGGCAGCAAACCTGACGCTGACGCTAATGCTAACGATGTCGCTAATCCATCTGCGCTTAAGATCACTTAGTGAACtacatttatagtttatagaaCGAGAAGGTTACAGTTCAAACCTTCATCCAGATGCATTGAAGATCTCTTGTTGAAGTGTGTGAGGAATTCACGCAAGAACGTTCAGTTAGTCTGTATCACTCAATGCTAAATATTTATACTTATCAGAACGGATTCGGATCTTCAGAGAGCTTTAAGATCGCTTAATGATGAAGAGGACTTGAGGTTCTTTTAGGAGAACCTTCAGGATCAGGAACGTTAAAGATCATATCATTAACCACTTCCACTAGTCCACTGCTAAGTCCCCTCGGTGGTGAAGGACAGGTTGTAGTtattagaatgtgtgtgtgaggatctCGGGTGTGTGAGGATCTTGGGTGTGTGAGGATCTCGCAGGAAGGTTGGTGTCTTCAGCTTCGCttgttctggttctggttcttgTCAGGATCTTCTTCCCGAGCGGCGTTAGTCATGAGCAAGTGCTGGTTCTGTGGAAGCTGTTTAGTTTGTAAGCGCCGGTGTCATGTCCTCTGTGAGTGTTGTTCTGTCtcgctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtggaactctCGACTCGTCAACTGGAATCATGCTGCGTTCTTTGTGCTTTTCATCTCAACCTGTTGTCCAGATATTTGGACGAATGCAAGACCACATGCAGGCTGTTTCCTTATTTCATTGTAGGTGTTGTGAAGAATTCAGTCTTTCTGAAGCAGTGATAAAGAAACTCCATCTTCAGATAAGCTGCAGAAGTTTATTAATAACGTGTAGTTTCTCTCGCTCCGTGTGCAGCAGGCGACACTTTCTtcaggtgtgtgaggtgtaaCATGTTTCTGCTAAGTCTGCCTAACATTCATTTAACAATAAACCGtaagctgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaagcaaCGCTGCACTGAACTGACTGTTAGTGTCTTTATTGTCACTGAGACACGTTCCTCTTCCCTCTGTAGCGCTCAGCTCTGATATTTCAGGCTAAAGGATCAGCTCAGCTGTAGCCGGATGATCTCGCTGTAACTAATCCACGtttttttggtgtattttttatttcagtgtgagGGCTGTGAGGCTGCTGAAGCTGCATGAGCTCTCAGGATAAGCGGCGGTTTTGTTGTCTGTTTAACTCGATGCAGTTTCCTCTGTAACTCTGCTGCACTTCAGTGTAAATGAACCGAACCTCATGTTTGTACTGCTTCATTGTGCTGATAATAAACTCTGTATATTTTGCCA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K21917 KCTD7_14; BTB/POZ domain-containing protein KCTD7/14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309322 lncRNA upstream 710 517324 ~ 615120 (+) False G261101
TU309327 lncRNA upstream 710 517324 ~ 615120 (+) True G261101
TU309323 lncRNA upstream 710 517685 ~ 615120 (+) False G261101
TU309384 lncRNA upstream 37063 434343 ~ 578767 (+) True G261140
TU309324 lncRNA upstream 45652 517324 ~ 570178 (+) False G261101
TU309405 lncRNA downstream 36058 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 41665 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 84196 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 90077 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 149911 771258 ~ 773261 (+) True G261190
XM_034312547.1 mRNA upstream 3280 576083 ~ 612550 (+) True cux1a
XM_034312548.1 mRNA upstream 3280 576083 ~ 612550 (+) False cux1a
XM_034312549.1 mRNA upstream 3280 576499 ~ 612550 (+) False cux1a
XM_034312550.1 mRNA upstream 10516 576083 ~ 605314 (+) False cux1a
XM_034312782.1 mRNA upstream 98620 507279 ~ 517210 (+) True bcl7ba
XM_034312453.1 mRNA downstream 2039 623386 ~ 636006 (+) True rabgef1
XM_034312455.1 mRNA downstream 2039 623386 ~ 633969 (+) False rabgef1
XM_034312454.1 mRNA downstream 3539 624886 ~ 633972 (+) False rabgef1
XM_034312456.1 mRNA downstream 8664 630011 ~ 633973 (+) False rabgef1
XM_034312449.1 mRNA downstream 16271 637618 ~ 655240 (+) True trim37
TU309320 other upstream 103057 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 129630 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 135119 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 303844 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 349070 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 104480 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 473504 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 478025 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 480442 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 584644 1205991 ~ 1237132 (+) True G261503

Expression Profile