RNA id: XM_026911826.2


Basic Information

Item Value
RNA id XM_026911826.2
length 5053
RNA type mRNA
GC content 0.49
exon number 13
gene id apba1b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24718729 ~ 24733547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagagagagagagagagagagagaggggagtgTGTGATTAATGGATAGCTCtgctaatataaatataaaccagaTCCAGATTCACATCTGTCCAGCTGCATGGTACGTCCAGCTCGGCCTTCTTCCTTTACtttcaattcattttcagtttttaaacacTTCTTTTCTTTGCAGTGAAGAAGCTTGGAGACAGTCGAGAAGTGTGAACTAAGGAATGAGTTCTGTAGAATTCAGTTCTGTTTAATttaagtagtattttataatcactacatcatcttcatcactacATACACAGTCAGAAAGCTCCTTCTTCTTGCCTGTGGTCCGTTCACACACTCCTCAGAGCTCAGGGAGTCTGCGTGAGGAGGAAAGAGCTGGACTCCTGCAGCTCAGAGGAACAGCTCAGAGGAACAGCTCAGAGGAACAGTAACAATCTGTGCAGTTAAGACCTGAATCATGACTTCATACTGAAGAATCTGAAAATTATTCACAGCTTTAATCCAGATGCCTTCACCATGCAGACTGTCCTCCACTTCCTGCTCAGCTTCACTCCAGAGAAACGCAGCACCACTGTGACGTCAACAggcaaagtgcattatgggaactCAGCATCCGCTGTAGGCTGCACGGCTTGGACCTCAGCCtcctgcagtgcattgtgggatatttTACACTATAGCCTACTTTCAGAAATTATTTCTGAAACAGAAAAACTCCTTACCCAGTGAACTGTACAGCTAGAGAACAgggtgtggtttgggacatgaTGAAGATGACAGAGCTggactacattacccacaatcctaAAACCACTCGGTAAGCTATtctgttaccatggaaacgcTGGAACGCTGACTCCGGGTCTCCTGTAGAggttgctgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagggtgtgTCGGTGTGTCGCGGAGGATGCGGCTGTAATCCGGTGCGTCTCTGCGCGCGCACTGCGCCGCTCTCACCGTCACCGCGCGCGGACGcgttacacagagagagagagagagagagagagagagactgacgcGGAGAACCGAGAGGAACATGGACCCACAGACCCGAGCTGTGCTTCATCATCCCTCCGCTTCCTAACAGGTTGTGCAACAGCATCATGTCCACTTCATAGCAACAGCCATGAGTCACAGGGAGGAACCAGAGGAGGCAGGGTCCAAAGCCCCAATCCCTCAGCGCATCCGGCAGCCAAACAGTACTCCTGTAGAAGGAGGCCGTCCCAGGTGGAGGCCATGCCAGCTGAACAGCCAAGACGAACAGGGAAATgcccaacatcatcatcatcatcatcatcactaccaTCGACAGTCACACCAACAGCAGCCTGGCACTAATCGAGCTCCACCACGACGCAGCCGAAGACATGCCCCCTGCCACGCCCAGAGGGGGTCGAGTGAGAGTGGAGATGCAGGGCCACAGACAGGTCAGCAGCCTCGTCCAGGTGGGTCGAGGTATCGAAGGAGTGGTGATGGAGGGCATCAGCACAGACATCGACAGCAACCCAGACAGATTCATGCAGTTCCGCAACCCGTCGATGTTCCTGAGATCAATCCGGCCATGGACACTTTGTCTCCTGAGGAGTCTTCCCAGGAACTGCTGACTCCATCTTCACAGGAGGATCTGACTCCTTCCCAGGAGGAACTAACCCCCTCTCCACAGGAGGTATCACCTGTAGAGGAGCAAGATGAAGGTAGCCCAGGTCTACATTGTTCCTCCAGTACTGAGAGCAGCCTTCATGCACACTCTGAGCAGACCGAGGATcagcacagagagagggagcagaCAGAGGAGTGCAAGGGTGGGATAGACGAATGGGAAGTGGAGGGATGTCAGGAAAGGAGAGAGGAGGGGACAGAGTCTCACAAAGATGTTGAACAGGAAGAACAGAGTCAATTGGAGAAGGATTCCATGGCAAACGCTGGTAGTTCAAAAGGTAGTAAGAAGACCAGTAGGAGGTCTGGGCCCATCAGAGTAGATGTTCCACCTTTTGCGGAATTTCCACGTCAGCCACTACCAATCCCTAATTTCCAGGCTCAGCCTTTCTCAGAACCTCTTAGAGGTTACCCCGTGGAGCCCAAATCAGGTCCTATCCATCTCACCTCCGCCAACTACGCTGCCATGAGCACAGACATGAGGTCTGAATGCCAATCAGGTGCTCAGTCCTATGAAGAAACAATTTCAGACACCAGTTCAGAAGCCTTTTCTGCTTCATATCCATCAATCTCTGAGTCCTGTCCAAAGTTCTACCCAGTGACTCCAACAGAATCAGACAGAGAACTGTACCACTCACCACAAACAGGATGGTACCAGGAACACTCTGAGGACCAGCAGGGCTTTGAGAAAAACCATGACATGTCCACCAGTGAGGCTAATCCACAGATCAATCTCCATGAGGAGCAGAGACCACAGGGTTCTGTCGGTTCCAGACTGCACCACTATGACGAATACTCAGGAGATGAAGCTAGCAGTCCTGATAGAAGCAGAAGTAAGGTTTGGAGACGTAGTATAGAACAGGAATGTTCAGAGATCAGAAAGGAGCAGTGTGAGGTTCGTCCTCGTTTGCCTGTATTGGACAGAGAAGAGAAGCCAGAACATGACTCTTTAGAAGATAGACCACATGCTATTCAAGAATCTGCAAATGTTTCTGGAGATGCGATCTCTCTGGCAATAAGAGACATAAAGGAGGCAATCGAGGAAGTGAAGACTAAGACGGTGCGTTCACCGTACACGCCCGACAAACCCAAAGAGCCGGTGTGGGTGATGAGGAGAGACGTCAGCCCGGTGGAGGAGTGCCAGCCACAGCTTTATTCACCTCCATCTCCTCCACAGCTTCCTTCTCCTCAGAACGAGACATGTTCCCAGGTTCTAGCTTCAGATCCCATAGTTCCTCTGGGAGCAGAATCTTCCACAGCTCATGAGCACCAGGAATCAGACATCAGTCCCAGTTTACCAACAGCTGAAGAGctTAGAAGGAACTTGGCTGCTTTTCCTACATATGTTGATGTTCCAGGACCGTGTGATCCAGAGGATTTAATCGATGGTATCATATTTGCAGCCAGTTTTTTGGGTTCCACACAGCTGCTGTCAGAGAGAACGCCGAGTAAGAGCGCCCGCATGCAGCAGGCTCAGGAGGCCATGACCCGCGTCCGGGGTGCAGGAGGCGAGCTTCTCTCTACCACTGAGGTGGATCTCTTCGTGTCGACTCAGAGGATTAAAGTTCTCAACGCTGACACACAGGAGACAATGATGGACCATCCTCTGAGGACCATCTCTTACATCGCGGACATCGGGAACATGGTGGTCCTGATGGCGCGCAGGAAGATGATCCGCTCTCGCAGCGCTCAGGAGCAGCTGGACACAGCCGATGCTCAGCAGTTGAACCCGGCGCAGGAAGAACAGCGGCAGTACAGGATGATCTGCCATGTGTTCGAGTCAGAGGACGCTCAGTTGATCGCTCAGTCCATCGGTCAGTCCTTCAGCGTGGCGTATCAGGAGTTCTTGCGCGCGAATGGTATCGATCCGGAGGACCTGAGTCAGAGAGAGTACAGCGACCTGCTCAACACTCAGGACATGTACAACGACGACCTCATCCACTTCTCCAAGTCTGAGAACTGCAGAGACGTGTATATAGAGAAGCAGAAGGGTGAAATCCTGGGTGTGGTGATCGTGGAGTCCGGATGGGGCTCCATCTTACCCACCGTCATCATCGCCAGCCTGATGCACGCTGGACCGGCGGCGAAATCCGGCCGTCTCAACATCGGAGATCAGATCATGACGGTGAACGGGACGAGTCTGGTGGGTCTGCCGCTGTCCACCTGCCAGAGCATCATCAAGGGCCTGAAGTCTCAGTCCAGGGTTAAGATGAACATTGTCAGATGTCCTCCAGTCACCATGGTCCTCATCCGCAGACCAGACCTCCGCTACCAGCTCGGCTTCAGCGTAcagaatggcattATCTGCAGTCTGATGAGGGGGGGTATTGCAGAAAGGGGCGGAGTCAGAGTGGGCCACCGCATCATCGAGATTAACGGGCAGAGTGTGGTGGCCACGCCCCACGAGAAGATCGTTCATATTCTGTCTAGTGCTGTAGGAGAGATCCACATGAAGACCATGCCTGCTGCCATGTACCGCCTGCTGACGGCGCAGGAACAGCCCGTCTACATCTGAACCCCGCTAACGTAAAGATCGCTAACATCGCTACGCCTCACCCTCACACTCCGTCACACTTCACATGATTATCAGATTGTTTACAGATTTCTTACTCCGGAAGTAAAAACTTTTCCTCTCATAATATTTTAATCTGCCTTAATAACGTGTGTAATTGTGGAGAGAAGCTACATCACCCAGACATGCTAGCATTAGCTCGGTTGCTAACTCTACTAGGATGTAAACTGGATTACAGCCCAAAGGCtaaatgcagtgtgtgataATCGTGTTAGAACTGATGGTTTGTTGGTTCCTATGACATATTGCTTATTTTACTATTAGCCTTCAaagttttggtttggttttttttttttattttattttgggaTAAAGTCTCATTTTTGTGCAAGTGTCATGGATTTTTGTTTACAGGAGATTAACGTTTCAGACTTTGGTGTTCATCAGAGAAGATTTGCCAGATTTATAGCTTCTATTTCAGATGAAAGATTTCTTTAAGTATATGAAGGGATTTTGTTAGAGGTCTATGATTATGAAATCTCTCCGTCACTGGAataattaagaaaagaaaattaataactacatttattacgtgcacacacacacgttcctcCATACGACACGTTTCTCTAACAGCCAAAGACTAAAATCCagagatttatttatcatttgaaCACTGGACCTACACTAACGTCAGCCTGAGCAGCgccgcaggtgtgtgtgtgtgtgtgtgtgtttgtgatgttatatattacacaatatGAAGTTATGGTGCAGAAATAACCTGAGAAACAACACTGTTATTCATGAAAGTAAAGGAAAACTGCATAGAGctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325417 lncRNA upstream 35790 24681463 ~ 24682939 (+) True G274662
TU325402 lncRNA upstream 60034 24599862 ~ 24658695 (+) False zfand5b
TU325407 lncRNA upstream 66532 24651750 ~ 24652197 (+) True G274653
TU325400 lncRNA upstream 135451 24582981 ~ 24583278 (+) True G274646
TU325393 lncRNA upstream 180993 24537130 ~ 24537736 (+) True G274639
TU325454 lncRNA downstream 21635 24755182 ~ 24755384 (+) True G274696
TU325470 lncRNA downstream 45514 24779061 ~ 24779322 (+) True G274710
TU325474 lncRNA downstream 49349 24782896 ~ 24783522 (+) True G274714
TU325464 lncRNA downstream 51252 24784799 ~ 24795110 (+) True G274704
TU325462 lncRNA downstream 60006 24793553 ~ 24808503 (+) False G274704
XM_034312313.1 mRNA upstream 60028 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA upstream 60028 24654647 ~ 24658701 (+) False zfand5b
XM_034312379.1 mRNA upstream 79087 24585517 ~ 24639642 (+) True erbin
XM_034312566.1 mRNA upstream 193506 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA upstream 193506 24511482 ~ 24525223 (+) False nln
TU325389 other upstream 131177 24529978 ~ 24587552 (+) False erbin
TU325154 other upstream 490051 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 614134 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1358226 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1444559 23265453 ~ 23274170 (+) False rc3h2

Expression Profile