RNA id: XM_026911830.2


Basic Information

Item Value
RNA id XM_026911830.2
length 2369
RNA type mRNA
GC content 0.46
exon number 15
gene id pip5k1ba
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24761216 ~ 24777827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACAGGCGCGCGCGGCTGCAGGAGATGAGCAGGATCAGCGGAATGGCGGCTCTCTGAGGAAAACACGGAGCTTTAATGGGAATAAACCGCGCGGATTTCCGGTTTACAGGACTCATGGTTTAATGTCGGATTGGAGATGCAGCGGAAATAAAGATCAGTTTAAAAGATGTCTGCACCAGATGAAAGCGGAGGTAGAAAACCTCAGAAGAGCGGAGGCAAGAATCACAAAAAGCCCACAGCTGAGGCAGTAAAAGGAGCCATTCAGCTGGGGATTGCCTACACGGTGGGGAACCTGACCTCCAAACCAGATCGAGATGTTCTCATGCAGGACTTTTATGTGGTGGAGAGCGTCTTTTTCCCCAGTGAAGGCAGTAACCTGACCCCGGGACATCACTACCCCGATTTCCGCTTTAAAATCTACGCTCCGCTGGCCTTCCGCTATTTCAGAGAACTGTTCGGTATCAAACCTGATGACTATCTGTATTCCATGTGTAATGAGCCCCTGATCGAGCTGTCGAACCCGGGGGCGAGCAGCTCGTGGTTTTACGTAACCAGTGATGACGAGTTTATCATCAAAACGGTGCAGCACAAAGAGGCGGAGTTTCTGCAGAAGCTGCTTCCTGGTTATTACATGaacCTGAACCAGAACCCGAGGACGCTGCTACCTAAATTTTATGGTCTTTACTGTGTTCAGTGTGGAGGAGTGAATATTAGGCTGGTGGTGATGAACAACGTTCTGCCTCGCTCTGTAAACATGCACTACAAATACGACCTGAAGGGTTCCACGTACAAACGCAGAGCCTCACGTAAAGAACGCGCCAAGTCCTCGCCCACTTTCAAAGACCTGGACTTCCAGGACATGCACGCGGATGGGCTTTACTTTGACACAGACACGTACAACGCACTGATGAAGACGCTACAGCGAGACTGTCGGGTGCTGGAGAGTTTTAAGATCATGGACTACAGCCTGCTGCTGGGAATCCACGTGCTGGACATGAAGCTGAGGGACAGAGGAGGACGAGGAGACAGCAAGCGACAGGGAGGACAAAAAGTGCTTTACTCTACGGCTCTCGAGTCCATCCAGGGAGGAGGAAAAGCTGTGGAGCCACGCCCGAACACCGACGATGACGACACAATGGGTGGAATTCCTGCGAAACACAAAGACGAGAAGCTGCTCATCTTTTTGGGGATCATCGACATTCTGCAGTcgtacagGTTTATTAAGAAGGTGGAACACTCGTGGAAAGCTCTCGTACATGATGGTGATACAGTGTCAGTCCACAGGCCGAGTTTCTACGCTGATAGGTTTTTAAAGTTTATGGGAGGAACGGTGTTTAAGAAGATTAATCCTCTGCGAGGCGCTTCCTCTCGAAGGAAACGAAACTCAGTCCAGCCGGTGAGATCTGCGTCACATGAAGTCCTGTCTCCGATTAAAGAGGAGAGATCTGAGGAGAGAAAAGCGCAGAGTCTGGAGAACCTCGATGATAACGATTTGGGCTCGTTTGTGAAACCTGACATCATTCCGAGCTCCACGGATCTTCACACGGCCGTTTCAGCCGCGACTGTGATCTCCATCTCCTCATCAGATGATCTAAACAAATTCCCGGAGGACGACGACATCAGCAGAGGTGAGTGTGGGAATTCCAGCTCCACTCTGGCTCTGGATGACTCGGCGTTCCGGTCTGATTCCTCACACTGCAGCACGTCGGATGCAGCACTGGATGTTTATCTGTGATGTGTGAAGTTCACTTCCTGTCGTCTGAAACATGATGCTCCGTGTTCACCGCGCTTTACTTCCTGCTGTTAGTGCACTTCATGTCACactgaggtcatgtgacctgtacatcattattttattattgtcacTCCTCTAACACAGCTCAAACTCAACTccactgaattattattattattattattattattattattattatgttaaagCCATGTAAATGATTtgctgatctgatctgatgaAAACGTTGTACTTCACAGAGACTCCTGTGGCATTTTGGTGTTATTTTTGAGAAATGGATTTTTAACACGCAGACCTTGTGCCTTATTTAGTGACGGATGTGAGAATAAATTTCCTCAGTGCCAAATTATttgagattaaataaaaatctgaattgaaaaataatcaaattgtttgcaatgcacaaaaacaaatccaaaattcCTCATGaattattagtaaaaaaaaatccctgatcTGATGTTTCCTTTAGAATATTTTCTTAAACCATGTTTAAAGTTGTTTtattacagatgtgtgtgtgtgtgtgtgtaatatattgtaAACGGATCTGTATTTATGGAAATCTGTTTAATGGTTATTGTGATATTAAACACTGTGTCTGTTTatgaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325670 lncRNA downstream 5834 24755180 ~ 24755382 (-) True G274857
TU325669 lncRNA downstream 11362 24749645 ~ 24749854 (-) True G274856
TU325645 lncRNA downstream 42085 24718931 ~ 24719131 (-) True G274841
TU325639 lncRNA downstream 65105 24694573 ~ 24696111 (-) True G274837
TU325596 lncRNA downstream 82458 24657290 ~ 24678758 (-) False G274808
TU325671 lncRNA upstream 2292 24780119 ~ 24780386 (-) True G274858
TU325672 lncRNA upstream 3134 24780961 ~ 24781675 (-) True G274859
TU325666 lncRNA upstream 21630 24799457 ~ 24803481 (-) True G274853
XM_034312575.1 mRNA downstream 11765 24733548 ~ 24749451 (-) True tjp2a
XM_034312447.1 mRNA downstream 42981 24698791 ~ 24718235 (-) True mamdc2b
XM_034312446.1 mRNA downstream 63364 24658808 ~ 24697852 (-) True smc5
XM_026942652.2 mRNA downstream 251736 24500862 ~ 24509480 (-) False sgtb
XM_034312576.1 mRNA upstream 15727 24793554 ~ 24797730 (-) True actr1
XM_034312377.1 mRNA upstream 28595 24806422 ~ 24808492 (-) True zgc:86599
XM_026911816.2 mRNA upstream 32976 24810803 ~ 24844734 (-) False LOC113525332
XM_026911817.2 mRNA upstream 32976 24810803 ~ 24827597 (-) True LOC113525332
XM_034312448.1 mRNA upstream 94223 24872050 ~ 24873662 (-) True LOC117599334
TU325248 other downstream 460212 24297481 ~ 24301004 (-) False LOC113544170
TU325209 other downstream 507910 24251603 ~ 24253306 (-) False inip
TU325032 other downstream 897948 23861998 ~ 23863268 (-) False nrarpa
TU325027 other downstream 958932 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 3554046 21189969 ~ 21207170 (-) False LOC113544130

Expression Profile