RNA id: XM_026912069.2


Basic Information

Item Value
RNA id XM_026912069.2
length 2129
RNA type mRNA
GC content 0.54
exon number 3
gene id znhit2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 66588 ~ 69388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGCTTCCGCGTTGACTTTGATGTGACGTCATCAAATCGCGACCGCTCTGTCTGGCAGCGCGGCGGCGTCTCTCGTGCGTTTACTAACCAGGCGgTGTGTGATGGAGCGCGTGTGGAGACGGAGGACGCCGGCGTTCGTGAGGTCGTTACTGATGGACGTCTCGCTGAAGGAGGACGAGCTGAGCGGTGGGACGGAACCTGAGCAGATGAGTAAAGACGGGATTTCACTTCCAGTGACGGCGGCGTGCGGCGCTGATCTGACTCCGGCTGCTGAGGAAGAGGACacatcttcatcctcctcctcctcctcattacGGCCCTGTGGGCTGTGTCTCAGTAACCCGGCACGTTACACTTGTCCCCGCTGTAACGTCTCCTACTGTGCACTGTCCTGTTACCGCAGCTCGGCTCACACGGCGTGTTCAGAGCAGTTTTATAAAGACTGTGTGTCTCAGGAGCTGAGGCAGCGTGGCAGGGCGGCGCACGAGGACAGGATTCACATGAGAGACATCCTGCTGAGGATGCGGCGGGCGGAGGGGGGGCTGGGCGGAGTCATGAGGGAGCTGATGGAGAACAGCGGAGGACAAGTGACTGAGAGGGACACGGAGACGCTAACGCTGCTGTCCAGACTAGCCGAGATTCAGACGGACAGAGAAGAAGGACACGAGGACGAGGTGCAGGACATCCTACAGAGACTCGCGCAGACAGAcgctgaggaagaggaaggtgaggaagaggaggatgtaGTGACGAAGCTGTCGGGACTAAATATCGAGTCTCTGACTGAAGACGAGCTGTGGACGCTCCTGCCGGAGAAGGACAAGCAGAAGTTTGAGCGGCTGCTAAAGGACGGCGGGATCAGCGCTCTCGTTCCAATATGGCGGCCGTGGTGGGAGGAGCATGAGCGAGACCGTGTGGTGCTGATCGAGGAGCTCCAGCGGGAGGGACGTGAAGAAACGAGCAGcgtggaggaagaagagagcaGAGACGTCCAGGACTTGGATACGGCATCAGAACATCCATCAccactgaaacaggaagttaaGAAGCAGAAGGTAAAAATGGAAGGAAGCAGAGACGCTCCTCCTCCAATCAGCTGTGAAATCCCGCCCCTGTCCTCTCTTTGCTCTGCCTCTCCGTCCCCGCTGGTGAAGTTCAGCCTGGTGAACGTGCTGTGCGGTTACGCCTTCACGCTCCGCCTCTTTAACGGAGACGTGTGGGAAACACAGCAGCTGCTGGAGTTCACTCGGCTCCTTCTGTCCGTGTCGGAGTGTTTGGGACGCAGCCGGACGTTCGGCTCGTTCTCCGAGGCTCTGAGCGCTGCGATGGCGTCCATCTCTGCAGAACTATACGACTCGGACTCGGCTCTGAGCGCAGTGGAAGACGTGGCTCACATCCTGAGCGGCGCGAGTAAGGACGATAGAGCGGGATACACACTCTCAGCACTCGCTCAGCTGCGCTCGGCGTTCGGCAAAGCGCGCACCGCAGCTCCcagagaccacgcccacttcaggaGGATGTGTTTCCTGGCAGGGAAGAAATGCGAGTTCCTGCAGGCGTGGGCCAacgagaacacacacacgctgaggGGTTTAGCCAGACGGGCGTGGTCAGAGtgtcagagacagacaggtgagagacaggagatggagagagacaggaaacagGTGGAGGAGGGCTGGAAGAAGGGAAGAGCACGAGGAAAAGTCATGATCGAAgagatttaatttattttaaaagtcatagcaattttcttttcagtttctgaaattataaaaaaacatacagtatattttcttataacaattatataaaatgacGTTTATTTccctacactcacacacacacacacacacacacacacagctgttttctttttgcaacagtaataaacacaaacattcatatTCATGTCCTTCTGCACTTGTTTATTGTTCTTGTTTCTTGAGCTGTGTTTCaaatatttcccttcactggagaaTCATGTGCACTACCTAGTACACTACTGTAGTGCACACTAGAGCAGAGTGTCCTCCTGACGTACAGCTGAGCGCCtgcatgtgtttaaaatatcctaatttgtctgaaattacattttataaattaaaatctcTGATCTTTACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309170 lncRNA upstream 11939 52397 ~ 54649 (+) False LOC117599401
TU309189 lncRNA downstream 41589 110977 ~ 112632 (+) True G261008
TU309206 lncRNA downstream 59752 129140 ~ 133142 (+) True G261018
TU309210 lncRNA downstream 62168 131556 ~ 132272 (+) True G261022
TU309208 lncRNA downstream 63169 132557 ~ 137612 (+) True G261020
TU309212 lncRNA downstream 66031 135419 ~ 135936 (+) True G261024
XM_026912073.2 mRNA upstream 298 63779 ~ 66290 (+) True mrpl49
XM_034312776.1 mRNA downstream 28301 97689 ~ 104789 (+) True wdr74
XM_034312780.1 mRNA downstream 156976 226364 ~ 245418 (+) True LOC113538163
XM_034312333.1 mRNA downstream 185558 254946 ~ 266773 (+) False fgf13b
XM_026933139.2 mRNA downstream 185558 254946 ~ 266082 (+) False fgf13b
XM_026933041.2 mRNA downstream 272283 341671 ~ 351928 (+) True il2rga
TU309200 other downstream 28360 97748 ~ 102029 (+) False wdr74
TU309275 other downstream 187238 256626 ~ 266760 (+) True fgf13b
XR_004579859.1 other downstream 242088 311476 ~ 311986 (+) True LOC117599405
TU309343 other downstream 375379 444767 ~ 480711 (+) True G261104
TU309389 other downstream 413047 482435 ~ 486200 (+) False prdm15

Expression Profile