RNA id: XM_026941568.2


Basic Information

Item Value
RNA id XM_026941568.2
length 4724
RNA type mRNA
GC content 0.41
exon number 7
gene id zgc:114200
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16538769 ~ 16552518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCGAGTGAAGGGTTGGTGTGATTGGAACGAGGCCCAGTGCTGCTGGCGTGGAAAACCCGGAAGTACAAAGCAAATAATCTGACAAACAAAAGCCTCAGGAAGTCGCATGCTTTGCTACGAGAAAAAAGGGGAATTCAAGGGTTTGAAGATGGCACACAAGAAAAAGTGGATATAAAATCGGCGTTAAGTGACATTAAATCAAACTAAAACACTATTAGTCGCAGGTTTACTCCTCAGTCCGTTAGCAGCACTGCTGGTGTAGCCGTGGTGGGGTTCCTAGCAGCCGgtgaaatgacatttttcttgcATGTGTGCTTTCTTTGTTCTGTTTAAGGGAAGTTTAGCAATCATCATCTGTCGAGGCGTTTACTTGGAGTCGAAAAACTTCAACCCAAGACTTTAGGTGTTTAAAAAGCCCTCACATCTCGGCTTGTAGTGCTAACCCGCTAGCTGGAAGTTTGTTGATTAGAATGACTGTGGCGGTGTTTTTCGGTTGTGCTTTTATAGCATTTGGCCCTGCTTTCGccctttttcttttcaccatCGCCAGAGATCCACTGCGAGTCATCATCCTGATCGCGGGtgctttCTTCTGGCTCCTGTCCCTCCTGTTATCCTCTCTGGTTTGGTTCATTGCTGTGAAAGCTAGCAATGTAGACGATGCCAAGGTACAGAAGGGTCTGCTGGTATTCGGGGTCGTGTTCTCAGTCCTCCTTCAGGAGGTTTTCCGATTTGCCTACTATAGACTGCTCAGGAAGGCTAATGAAGGCCTGGCAGCTATTAGCGATGAAGAAGCTTCACCCATTTCCGTCCGGCAAATGGCTTATGTGGCAGGGCTCGGCTTTGGGATAATAAGCGGGGCTTTCTCCATGATCAACATCCTATCTGACTCTCTGGGCCCAGGTACTGTGGGCATCTTTGGAGACTCTCAGTACTATTTTATCACCTCAGCTCTGATGACTCTGGCCATAACATTGCTGCACACGTTCTGGGGTGTGGTGTTCTTCGAGGGTTGTGAGAAGAGCCGCTGGTGGGTCATCGCTGTGGTGGTGTGTCTCCATCTGCTGGTCTCCAGTCTGTCTCTGATGAACCCGCTGTACGAAGGCAGTCTGCCTCCTGTGTATGTTGTAACGGCAGCCATGGCTGTGTGGGCGTTCTTCTCTTCAGGAGGGTCTCTGAACAACCTCTCCCAGCTCTGCACGCGTAAGAGGACCGAGGCAGCGTCTTCGTAAGGCAGCAAAGTCCTGACCTCACAGCAAGACGCAGGCAGTTTATTGGAAGGCTGCATTCACTGCTCGAAGTAACAGAAGCAGCTGGAGCAAGAACAGTAGCAGTGGCCTTCTGTTCTGATGATGGCTCTGGGGTTGAACTCGAACCCCCACCAACAGGGCTGCCTTACAGGTTATAGGACTCTCAGATCATGCTCAGTGTAAATAGCTTGACATCTGTACACACATAGGAATCCATGCTTTTAATGAATTTCTTTGATCGCAAGCATTTCAGAGTAGTATTTTACATATaacacagtgttgttttttttttgttttttttttgttaaatcatGAATGCTACTTTTCGTATTTTCTCTGGtaaaactgtaatgtaaatattaaaagtaagcCTTAGGAGgacaattttgttttaaaatcagAGGTAGGAGAGATGGCCTGGGGCCAGACTATGTCTTCCTTACAATCTGGATTTGTCCcatttaaactgtaaaactgGACTGGGAATAGTTCAAAAGGCAAACTGCAAACACTGAACCTGAAGAAAATAACTCTAATGTTGCCTCGAGCCAAATATGATGGACAGAGATAAGGTGCAACATTCTTCTAAATGTGAAATTTACAAAGTTATTCCTATGcctaaaaacatgacattttttgaGTCATACTACTATGTTTTGCATTTGTACTGCAGTAAACTAAACACATTTAGCCATGATTGACTGCATGGTGAAAAAACTGCCACCTAGTTTGTGGAATGATAATGAATCCAGACTTTAAAGCCGAACCAAAGCCATTGGTCTGACACAGTCTGGTCCCAGGCAAATGTCGAGACGTTTCAGCTGCTAATGCACCCCCTTAATAACACAGCACAAACCACAGTGGATCAGGATCAACAGTTCATTGATTTCCATTTCACACATTTAGCACTGAATATTTTCAGTGAGCCCTTTGAGCAGAGAACCTGATGCATTTGCTCTCATCAAACACCACATGGACAGAAATCCTCCGTCTGATGAGTTCTACATTGGGGCACACGTATGCAATGTGAATGTTCAAAGTGTATGTCCTCAGAGGCAGTCCACTGGCAAATATGTCGAATCAtctactgtgtatatatactaaTTATGCAGAATTAGCTTTGTAATTTGTGTCTCTTACATTGATTCATCAAAAGTTTTCTCTACATGTTCCTCAACTTTGAGAGTTCAATTAACAAGTCCGTCTAGATCGCCGGTCAGTAGAAGTCAGGAACACAGGTCCTCCTTAATGTAGCAGCGAATTCCCCTGCATCctcttccttttatttttcccGGTTTCTCTACTAACAGACTGTTGAGGGCTTCATTTTTAAGATCTCTCAAACTTTTATCTTGTGTAACTGGGTACAAACTTTCCTGTAGACAACAAGCAATATAACAGCTCTTTCTAGCGTTTGGTTCTACCGCTTCAAACACTGGTGCTGGCTTGTGTTATTTCAGGAGACATTCTTTAATTGTGTTTTCATTTCCATGAAATGTTCACTCTGTCATGGATGaacaagtgctttttttttacgCCCATATGGTTATTTAACCAACATAATGCTGCTTTGCTCTTTGTGAGATTATTTGTTTGAAACTGTTTGACTTTCCGCTGGTTTTGATTCGCCGCTCAAAGAACAGTTTCCAGACCAGCACACTGATAACGCATGTCCATAATCACATCCGTCATGATTGTAATATAAATCTGTGCCAGGTAAAgagatggttttttttgtttgttagtttgtttgtttttagtagAACCATTCATTAAGGTACATTATGGGCCTGAGCGGATGTTAGTGGTTGATTTCTCCAGTTTTATTTTGGCACAGCCATTTTGTACCTGGCTAACTGGTACCACATCATACAACCTCTGTCTCAGGACTCACTGTGTGATTAAGAACAAGCAACCTGATGTTCTGGACTAGTCCAAGGCAGCTTCATCTTTCTGAGGCACAGCTGGATTTTTATAGCTACCTAGAACATATCATCTCTTTGGGCATTTCTCTGTCCTAAATAAAATGCCACCTTCAGTATGCACCAAGTTCTGCAGAAGAATATGCTTCTGTTGTGGTTTATTTCACTCCGTTATCTACTCGTCTTTAAGACTACCATGATAAGCGACCTTGTTTGAACCTtgtaaatgaacttttttttttttttttttaaacagcagatAGAAAACTTGGTAGAGTTGCAGTGATACTACCTGTGCCTGGGTCATACTACAAGATTTATACAGTCTGTACCTTTCTGtttgctggggtggtacccttaTCTTTTGTACACAGAATACATTTCTTTCATGTAGAAACatgaatatagtgtacctttaaaaaaatacattctacAGGTACAAGGGTAAGGCTAAGTGTACTACCCCAGCGATAAGAAAAGGTGCAGTTTAgtaccttgttttttttgtttttttttctgagagtgtaacaGAAGGGAAAAATATGAGTGTACCCAGATGCAATGAGAGATCGTCTGGATCATCTTTCAGTTATCAATCCTCCCACACTACAAGATTTACCCAGAATAAAACAGCACAAGCTTTCCGATTATACTCAGCCAATGATCCTGACTCTCAGAACTTGGGATTTTGCAAAATTTCTTGTAAACAAACATGACTTCCGATCAAAGTGAACATGACAGAGACCAATTGTGCTTGGTTGCCATTGTTATGTTGTAAATGTTGAACATGTTTATTATTGAAAATTTGGATTTAACATACCCTATACCACAGGATAAAATCAGGACACCTTGTGATCATCAGAAGGGGCGACTCAACCTCAAAGTAGGCCTGATTATCCTTTAGCATGGCCCGTCTCCTGGACAGTCTCCTTCTTAATACACACTTCTCTATCCTCTATCATCCTGCATTGAACTTACGCTGCATTCAACTTAGCTTGGAAGTGGGAAGCTGGAGCTctgatttaaataattttcaacCGCATTTGAGCTGcacagtgggggaaaaaaaagggtgcctccatgtttgtcttttgttgcaACAATCTAGCCAGCGAACAGTGATGAgaaatttaacaagctaatatgtctgtGGTGATCAATTTAAATCAAATACTAGTAGATACAGTATAATtcaattaaaagaaagaagtaatactttgtttactgttgatgctgttaCTTGCTGAACTTGGAATTGACAAGACCTTCCCCACTTTccaagtaggaattctgagttgaagaggctttttctttggtttttcctagtcagaggttGGAAATTCCCAATTACAAGTTTTAGTTGACTGCAGCAATAATCACAACCGGTGCTCACCAGGATTTTGGACAGACTATGACAAATGGCATTGACATTTTATGCTGCTTTATAAAGTTTCAATGATTAGAATGTAACAAACAGGAAAACTCTTAATGTTAGAAACTCTTTCATCTTGggttaataaaaatgcagtgtagtggtgaaatgaaaatta

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320489 lncRNA upstream 28022 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 152837 16385030 ~ 16385932 (+) True G270520
XR_004579797.1 lncRNA upstream 174027 16327619 ~ 16364742 (+) True LOC117599337
TU320506 lncRNA downstream 23845 16576363 ~ 16577240 (+) True G270536
TU320608 lncRNA downstream 73466 16625984 ~ 16626358 (+) True G270626
TU320717 lncRNA downstream 245327 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 508463 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 534877 17087395 ~ 17087922 (+) True G270856
XM_026941905.2 mRNA upstream 3826 16511236 ~ 16534943 (+) False tpm2
XM_026941904.2 mRNA upstream 3826 16511237 ~ 16534943 (+) False tpm2
XM_026941909.2 mRNA upstream 3826 16518234 ~ 16534943 (+) True tpm2
XM_026941908.2 mRNA upstream 3826 16518237 ~ 16534943 (+) False tpm2
XM_026941907.2 mRNA upstream 8550 16511235 ~ 16530219 (+) False tpm2
XM_026941609.2 mRNA downstream 30518 16583036 ~ 16589994 (+) True reep5
XM_026942067.2 mRNA downstream 39375 16591893 ~ 16594397 (+) True LOC113543669
XM_026941747.2 mRNA downstream 117799 16670317 ~ 16744667 (+) False pam
XM_026941750.2 mRNA downstream 117799 16670317 ~ 16744667 (+) False pam
XM_034312523.1 mRNA downstream 117811 16670329 ~ 16744667 (+) True pam
XR_004579771.1 other upstream 1767696 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3222553 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5968064 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6784179 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 7113914 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 72391 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 72882 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 72964 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 73455 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 73537 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile