RNA id: XM_026941586.2


Basic Information

Item Value
RNA id XM_026941586.2
length 1480
RNA type mRNA
GC content 0.44
exon number 8
gene id vps26c
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11641023 ~ 11649190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGAAAATCGTCACGTGGTTCCGATAACCAGGAAGAGACACTACAGAAAATACACAGTGTTCTTTACAGTGTTTGAGAAAATGAGTGTTACCTTGGATTTAAGGCTTAAGCGTGCGAACAAAGTGTATCATGAAGGGGAGGTCCTGGCTGGAGTGGTGGTGATCACCAGTAAGGAAGCTGTGCAACACCAGGGAATCACCCTCACCATGGAGGGTCTTGTTAACCTGCAGCTCAGCTCCAAGAGTGTTGGCGTCTTCGAGGCTTTTTACAACTCGGTCAAGCCCATTCAGCTGATCAGCAGTAGCATTGAAGTGGCCAAACCAGGCAAGGTGCCAGGAGGCAAAACTGAAATTCCCTTTGAGTTTCCGCTGCAAgcaaaaggaaataaagtgCTGTACGAGACCTACCATGGTGTTTTCGTCAACATTCAgTACACTCTCCGCTGTGATATGAAGCGCCCTCTGCTGGCAAAAGACCTGAGCAAGACCTGCGAATTCATGGTCCATTGTCAGCCACAGAAATCCAAAGTGCAGCTGACTCCAGTTGATTTCACCATCACACCAGAGACGTTGCAGAATGTGAGAGAGAAGAGTTCTCTCCCAAAGTTCCTGATCAGAGGCCGCCTCGATGCCACTAACTGTGTGATCACACAGCCGCTCACAGGGGAGCTGGTGGTGGAGAGTTCAGAGGTCGCCATCAAAAGCATCGAGCTGCAGCTAGTCCGGGTTGAGACGTGCGGTTGTGCTGAAGGCTATGCCAGAGATGCGACAGAGATTCAGAACATCCAGATAGCAGAGGGAGATGTGTGTCATGGCCTCCCCATCCCTATATACATGGTCTTCCCCAGGCTTTTCACATGCCCTACACTCGAAACCACAAACTTTAAAGTTGAGTTTGAGGTGAACGTGGTGATTGTTTTTCACGATGATCATTTAATAACTGAGAACTTCCCGTTGAAGCTGTGCCGAGTATGAGATCAGAGCCTGCAGATTCATTGATGTTTTCTGGAAGACTCTGGGAGTGGCCTTACAACTGTTTAACTGCCAGTCAGCAATGAGCAGGATGGCTTTTGTTACAGCTAAAGACAtaattgacataattattacatACATGCCATTTTCGGCACTTACTGTGTCAGTTTTTTGAGTTCTTGGAATCATTGTCGGAAAGCTAGCCCATTTGTtccctctttttattttctggttTTTGTATGACTGGGTTTTTTATGTGATCAAATCAGTTCATTTCAAACATGCTAGTATCATATGGCAAAGAGCAGAACTGCCTGTAAATTTCCCTTATAATTAtagcatttaatataaaagttGTGTACATTACTTTGCGCTTAGatattcatttactttcttcctgacaaggaaaaaaagtgtgtgtgacctTTGTGTCCCTTGTATAAAACATAAAGTACAAGAATAAATTAGTACTAATGTTATttccataaaataaatctggtaTACATca

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030904 retromer complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316789 lncRNA upstream 13051 11624374 ~ 11627972 (+) True G267314
TU316726 lncRNA upstream 208161 11432659 ~ 11432862 (+) True G267257
TU316536 lncRNA upstream 529426 11111386 ~ 11111597 (+) True G267103
TU316518 lncRNA upstream 553160 11086248 ~ 11087863 (+) True G267090
TU316497 lncRNA upstream 584002 11056612 ~ 11057021 (+) True G267070
TU316792 lncRNA downstream 1239 11650429 ~ 11652188 (+) True G267317
TU316842 lncRNA downstream 179379 11828569 ~ 11828818 (+) True G267362
TU316866 lncRNA downstream 214697 11863887 ~ 11868663 (+) True G267381
TU316918 lncRNA downstream 331991 11981181 ~ 12011289 (+) True G267429
TU316997 lncRNA downstream 781894 12431084 ~ 12431810 (+) True G267499
XM_026942010.2 mRNA upstream 23702 11553248 ~ 11617321 (+) True kcnj6
XM_026942009.2 mRNA upstream 23702 11553248 ~ 11617321 (+) False kcnj6
XM_034312527.1 mRNA upstream 127555 11467130 ~ 11513468 (+) False erg
XM_026941857.2 mRNA downstream 37125 11686315 ~ 11691822 (+) True pigp
XM_026941856.2 mRNA downstream 37306 11686496 ~ 11691822 (+) False pigp
XM_034312724.1 mRNA downstream 47790 11696980 ~ 11723734 (+) False hlcs
XM_026941954.2 mRNA downstream 47819 11697009 ~ 11723734 (+) True hlcs
XM_026941735.2 mRNA downstream 110163 11759353 ~ 11797070 (+) True LOC113543498
TU316249 other upstream 1070318 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1886433 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 2216168 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 2216168 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 2304733 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 1666748 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3113123 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 4975719 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 4976210 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 4976292 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile