RNA id: XM_034312484.1


Basic Information

Item Value
RNA id XM_034312484.1
length 5074
RNA type mRNA
GC content 0.48
exon number 31
gene id ppip5k2
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16748920 ~ 16787635 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTCCGTGCCACTTGCTGTCTCGCTTTTTGATGCGGCTCTTTGAAAAGTCGCGTGCAGGACCTTTAGCCGTTAGCTGCTGCTCGGAGAGACCAGAAAACTCTGACTGCAATAAACGCACAGTAATAAAACGCGCTCGGAGCTCGGAACCGcattcaaggtGAAGAACATCCTGATGGCTGACTGTGAAGAACAGGAACGAGGGAGAGGAGTGACAGCTTGGCCCTTTTAACCGTGCTGGCTTATGAACCGGTGCTGGGAGCTGCTCCATTCTCCTCCTGCCCTGTTGGGCTGAAAGGGCAGGACAGAGCACGGGGGTTTGGCTTGGCACCGTGGCACAGCGGGCACGAGGCAGAGCAGGTCGGAGACATGTCAGAGGGTGAGGATGCCGATCACCCTCGCTTCTTCGTTGGTGCTGATGATGGAGAAGGAGAGGAGCTGCTGGACCCGGGCCGAGTGCTGGGCTACGACTGCCTCTATGAGAACGTtgaggaggaagatgaggatgCAGATGAGGAAGAGTACGACTCGCCtccagagagacagatagtggTGGGAATTTGTGCCATGGCCAAGAAGTCCAAGTCCAAGCCGATGAAGGAGATCCTGGAACGTCTGTGTCTCTTCAAGTACATCACGGTGGTCACGTTCGAGGAGGAGGTCATCCTCAACGAGCCTGTGGAGAACTGGCCACTATGTGACTGTCTTATCTCATTCCACTCCAAAGGATTTCCACTGGACAAAGCTGTAGCTTATGAAAAGCTCAGGAATCCATTTGTGATCAATGATCTGAATCTGCAGTACTGCATTCAGGACAGGAGGGAAGTGTATCGGATCTTGAAGGCAGAGGGTATCCAGCTTCCACGCTATGCCGTCCTAAACAGAGACCCAGCCAGACCAGAAGAATGTAACCTGGTTGAGGGAGAGGACCATGTGGAGGTAAATGGGGAAATTTTCCAGAAGCCTTTTGTGGAGAAGCCAGTGAGTGCTGAGGACCATAATGTCTATATCTACTACCCCACGTCTGCAGGAGGGGGAAGTCAGAGGCTCTTTCGCAAGaTTGGCAGCAGAAGTAGTGTATATTCCCCTGAGAGTAGTGTCCGGAAAACAGGCTCTTACATATATGAAGAGTTTATGCCTACAGATGGGACGGACGTTAAGGTGTACACAGTGGGTCCAGACTATGCCCACGCTGAGGCCCGTAAATCTCCTGCTCTGGATGGAAAGGTGGAACGAGACAGTGAAGGAAAAGAAGTGCGCTATCCTGTCATCCTCAATGCCAGAGAAAAACTCATCGCATGGAAAGTCTGTCTGGCCTTTAAGCAAACAGTGTGTGGGTTTGACCTTCTTCGTGCTAACGGCCAGTCATACGTCTGTGATGTGAATGGCTTCAGCTTTGTAAAGAACTCCATGAAATATTATGATGACTGTGCAAAAATTCTTGGgAATATTATCATGCGAGAGCTAGCTCCTCAGTTCCAGATTCCATGGTCCATCCCTCTGGAAGCAGAAGACATTCCCATAGTTCCCACCACCTCTGGGACAATGATGGAGCTGAGGTGTGTGATTGCTGTGATCCGACATGGAGACAGAACTCCCAAGCAGAAGATGAAAATGGAGGTTCGACATCAAAGGTTTTTTGACCTCTTTGAGAAATACGAGGGGTACAAAAGTGGAAAGCTGAAACTAAAAAAGCCAAAGCAACTTCAGGAAGTTTTAGACATTGCCAGACAGCTGTTGGTCGAACTAGGGCAGAATAATGATACAGAAATTGAAGAAAGCAAAGCCAAACTTGAGCAGCTGAAAACGGTCCTTGAGATGTATGGCCATTTTTCAGGTATCAATCGTAAGGTCCAGTTAACATATCTCCCACATGGCTGCCCAAAAACATCTAGTGAAGAGGAAGatGTGCGGAGGGATGACCCATCCTTACTGCTGGTGCTGAAATGGGGTGGGGAGTTGACTCCAGCAGGCAGGGTACAGGCAGAGGAACTAGGTCGAGCATTTAGGTGCATGTACCCTGGAGGACAAGGTGACTATGCAGGTTTTCCTGGCTGTGGCCTGTTGCGTCTGCACAGCACGTATCGACATGACCTGAAGATCTATGCTTCTGATGAGGGCCGGGTTCAGATGACTGCAGCCGCTTTTGCCAAGGGTCTCTTGGCACTGGAGGGTGAGCTGACCCCTATCCTGGTGCAGATGGTGAAAAGTGCCAACATGAATGGTCTGCTGGACAGCGACAGCGACTCTTTAAGCAGCTGTCAACAGCGAGTTAAAGCTCGACTCCACGAGATCCTGCAGAAGGACAGAGACTTCACCCCCGAAGACTATGAAAAGCTGGCTCCCACTACGAGTACATCACTAGTGAAATCCATGCAGATGATCAAGAACCCAGTAAAGACGTGCGATAAAGTTTATTCTCTCATCCAAAACCTAACACTGCAGATCAGACAGAGGATGGAGGACCCCAAGTCAGCAGACATCCAGCTGTACCACAGCGAGACTCTGGAGTTGATGCTACGTCGCTGGTCCAAACTGGAGAAGGACTTCAAGATGAAAAACGGACGCTACAACATCAGTAAGATCCCGGACATCTATGATTGCATCAAATACGACGTGCAGCACAACAGCTCACTTAAGCTCGACAACACCATGGAGATCTACAGGCTCTCTAAAGCTCTGGCTGATATCGTCATTCCACAGGAATATGGTATTTCTCAAGCTGAGAAGCTGGACATTGCCAAAGGCTACTGCACACCGCTGATTCGCAAAATCCGCTCCGACCTCCAGAGAACGCAGGATGATGACACAGTCAACAAACTTCACCCAGTTTATTCCAGAGGAGTCATGTCTCCGGAGCGTCATGTTCGCACCAGGCTCTACTTCACCAGTGAGAGTCATGTGcactctctcctctccatcCTACGCTACGGAGCTCTCTGTGATGAGACCAAAGATGAGCAGTGGAAGAGGGCCATGGAGTACCTGAAAGTGGTCAGTGAGCTGAACTACATGACCCAGATTGTTATCATGCTGTATGAGGATCCCAATAAGGATCCATCTTCAGAGGAGCGTTTTCATGTGGAGCTGCATTTCAGTCCAGGAGCAAAAGGCTGTGAGGAGGACAAAAACCTGCCATCAGGATTTGGCTACAGACCAGCATCCAGAGAgAGCGAAGGCTCCAAAAAGAAGTTGCAGAACGACAGTGACGAGGAGACGAGTAATTTAAAGCGGGACGAGCCAGATCGAGCCCTTGTCATGTTCCGACCCATGGTGTCCGACCCCATCTACATTCACAGGAAGTCTCCCCTTCCACGCTCCAAAAAGATCGGCTCTGTAGAAGAAGAAAGCCCCCTGAGTGTGTCTAGCCCTGAGTCTATTGGTACCTGGATACATTACACCTGTGGTGTTGGTACTGGGCGTCGAAGACGCAGATCAGGGGACCAAATAACTTCCTCCCCTGTCTCCCCCAAATCACTGGCTTTCACATCCAGTATTTTTGGCTCATGGCAACAGGTTCTTTCGGAGAACAACAGTCACACAAGGCCTGCCAGACTACACTCAGATCAGAAGCTCACCACTGGAATAGGGTCTCATTGTGCTGGCCTGTTTAGCACCATGGTGCTGGGAGGCTCCTCCAGCGCCCCTAACCTACAAGATTATGCTCGCACACACCGTAAAAAGCTGACCTCTTCTGCCTTCTTAGATGagGCCACGCGTGGTTCTGCTGTTAAAAGATTTTCTATCTCATTTGCGCGACACCCAACCAATGGCTTTGAGTTATACTCCATGGTTCCCTCCATCTGCCCGCTGGAGACCCTCCACAATTCACTGTCCCTTAAACAAGTCGACGACTTCCTCGCGTCGATTGCCACCTCCCACGATTCCCTGCTGGAAATATCTGTGTGCTCACCAGCTGTTCAAGGAAAGAAAGTTCCCTTAAACACATACACTCCTGCGAAGGTTTTACCGTGTCCTTTCACTCAGGCTGTGGGAAAGAAGTCACCCGAGCGCACTACATCAGCCAGCGGAAGCTCTCCTTCCAGAGTGGCCCGATCGAGCAGAGCCGATGCTGTTCAGCACGTTGCCGCTGGAGACAGAGCATTACAGCAGAGCTCACCTCCGTGGTGTACAGAGAGCAACACACCCTCTAAGCCCAACACTGCAGCTGATAGCATCCTGGTCACCTCTCCACCAACATCCTGTAAAGCCCAACTCCACCCAACCTACCAGGAAACCCAGGAGGACAGTGTATCCACCCACACTCAAGACTGGACAGGATGCTGTAGAGTCTCATCACAACTCGCAACTCCTCACACAAGTGTCACTAAAGCATATCAGGTATCAtccagtgacagtcatgtcccTATCatgccaaaacaaaacacagaggaaactCAGAGTGGAGCCAAACCTGCAGACTGCTCAAGAGGAGCAACATGAAGGCAAAATGCAGCCATGTTCTCCAACACCAGTAATGCAAACCTCATCATCAACTGTGTTAATAGACCACAAAGCCATTCTTGATTCCACGAAACTGACCAAACCTTGAATTTCACTGAAATAGTGATAATCAGATAGCACTGTTACATTAAACTAGTAGTTTATCAGTAGTGCAATTTGAACTATTAAACACATTCGTCTTATAGATACTATCGCAGACATGATTGATTTAACGGGTAGTATGATCTTGACTGTACACTCATGAAATTATTTCTCATATCTTGTATATTTGAATGTAAACCAGATGTTTACAGTCATACTAGATCCATTTCATTGTAGTCTATTTTAATTAATCCTGATCATTAAATAAACAGCACCTTTGGATATTATTATCAAGATCcaaagtaaaatgtaatgaaactgAAAGTTCTATTTTTCACATATCTTTGGTTAccaaaaatgtgcattttatttttctttctcatttagCTGCAGATGAGATGTCTGCCTTACAGTAATTGTTGGGAAAGATATGTTTCACCAGTGTATTCCATCCTAAACAAACAtgattgtgtatatatacatataaatgtatgtatattggGAATAAACCTCAGTGGAACCcctgtta

Function

GO:

id name namespace
GO:0003993 acid phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320608 lncRNA upstream 122562 16625984 ~ 16626358 (+) True G270626
TU320506 lncRNA upstream 171680 16576363 ~ 16577240 (+) True G270536
TU320489 lncRNA upstream 238173 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 362988 16385030 ~ 16385932 (+) True G270520
TU320453 lncRNA upstream 397461 16351248 ~ 16351459 (+) True G270495
TU320717 lncRNA downstream 10210 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 273346 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 299760 17087395 ~ 17087922 (+) True G270856
TU320889 lncRNA downstream 311506 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320899 lncRNA downstream 340382 17128017 ~ 17138981 (+) True G270870
XM_026941747.2 mRNA upstream 4253 16670317 ~ 16744667 (+) False pam
XM_026941750.2 mRNA upstream 4253 16670317 ~ 16744667 (+) False pam
XM_034312523.1 mRNA upstream 4253 16670329 ~ 16744667 (+) True pam
XM_026941748.2 mRNA upstream 4253 16674468 ~ 16744667 (+) False pam
XM_026942067.2 mRNA upstream 154523 16591893 ~ 16594397 (+) True LOC113543669
XM_026941590.2 mRNA downstream 4991 16792626 ~ 16797311 (+) True macir
XM_034312274.1 mRNA downstream 5016 16792651 ~ 16797311 (+) False macir
XM_034312324.1 mRNA downstream 14823 16802458 ~ 16805021 (+) True LOC117599317
XM_026942506.2 mRNA downstream 40527 16828162 ~ 16892899 (+) False syk
XM_034312418.1 mRNA downstream 73145 16860780 ~ 16892899 (+) False syk
trnam-cau_39 other upstream 120025 16628824 ~ 16628895 (+) True trnam-cau_39
trnar-ccu_10 other upstream 120106 16628742 ~ 16628814 (+) True trnar-ccu_10
trnam-cau_38 other upstream 122045 16626804 ~ 16626875 (+) True trnam-cau_38
trnam-cau_37 other upstream 122794 16626055 ~ 16626126 (+) True trnam-cau_37
trnar-ccu_9 other upstream 122875 16625973 ~ 16626045 (+) True trnar-ccu_9
trnar-ccu_11 other downstream 300033 17087668 ~ 17087740 (+) True trnar-ccu_11
trnam-cau_40 other downstream 300113 17087748 ~ 17087819 (+) True trnam-cau_40
trnar-ccu_12 other downstream 300814 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_41 other downstream 300894 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_13 other downstream 301592 17089227 ~ 17089299 (+) True trnar-ccu_13

Expression Profile