RNA id: XM_026941727.2


Basic Information

Item Value
RNA id XM_026941727.2
length 2415
RNA type mRNA
GC content 0.44
exon number 9
gene id sh2d4a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16246951 ~ 16257688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGGGTGGAAACTTCTCTCTGAGGAACTGAGCAAACCTTCAGGCGACTCTTACAATGTTTCTAGTGACATGAGTTTGTCAATTACTGAATCATTTCACATTTTGGAAGACAGTAAGTGACTAGAGAAGATCCTCAAGttgtTTGGAACGTCACAGTGAGGAATCAGTGATTCCCTGCTGAACTTTTTGGCCAGTGCCTCTGAACTTCTGAAACTTTGGATTTTTCTGGACTGTACACATGAAGAATATTTCTTCCTAAGACGAAGGATACAGGACTATCACCATGCTGCAGCAGATTCTCAATGACATGTACATCGAGCCAGAGCTGCTGGCTGAGCTGAATGAAGAGCAGAAGCAGGTTCTCTTCTTTAAAATGAGAGAAGAACAGGTCCGCaggtggaaagagagagaagcacgACTCGAGAAGGATGAGGCTAAAACGGTGAAGCCCAAAAGAGTCTCAGCGAAGGCTGTATCGTGGCTGAAGGCGTCAGACAGtgaggtgtgggtgtgggtgatGGGAGAGCATCCTGATGATAAACCTTATGACCAGATCTGTGATGAGATCATGGCTGAGAGGGCAGCACTACAGGCCCAGAAAGAAGCAGAGGAACTCAGGGCCAAGAAAGAAGCTGAACTGGAGAAACGTTTCTCTGGGTTGTATATGGAGAAAGAGGAAGCTGCCAGGCAGGAAGAAGCCCGAAAGGCAGCTGCCCTGGAGAAGAGCCAACAAGAGGAGTTGAAGAGgcgggaggaggaggaaagacaAAAAGCCGAGGAGGAGGTCAGGAGGCTTAAGGAGGAGCGGGAGCAACAGATCTATATGAACCTGAAGGAAGTACAGAGACAAGGGAAAAGCCAAGATAAAGAGGAGAAAGCCTGGCAGGATTCATtGCGGAAATCTAAAGCAGCTGACCAGCGGAGACGTTCTCTGGCCAAGCAGACGAGGGAGGATCACCGCAGGCGTTCTTTAAAGGCACTGGAGAGAGGTCGAGTTGCGGCCATGACCAAGGCCTTTGGAGGAGAGAGACCGGCTCCTCCACCTAAACCCAAACCCAAACCCAGAAACCTAACTCTCACTAATGAGCCTCTTCACAGGGGGTCCGGTTTACGTCGTTCATTATCATCGTCCAGCCGGAAGGAGATTATCCGCTGGTTCAGAGAGGAACAGTTGTCCATCAGAGTTTGTTTCCAAGACGACGATAGCCGCATCGCTCCCTGGTTCCACGGTATAATCTCACGTCAGGAGGCTGAGGATTTGCTGAGAGAGGGCAGCCCTGGAGGCTTCTTGGTCCGTGTTAGTGAAAGGATCTTTGGATATGTTCTGTCTTACCAAAGCCCAGACGGAGTCAAGCACTTCCTCATTGATGCCACAGACAACTGCTACATGCTGCTAGGAGACCAGATCAAGTTCGCGTCTCTGGGAGAGCTGGTGGAGTACCATAAGGAAGAGCCCTTAACGCCCTCTGGAGGTGAGCGGCTGCTGCATGCGTGTGGACAGAAACCCGGCACTCTGGACTACACCGATCTCTTCACCTGAAGCCTGCGGCTCTGTAGCTCAGTGAGCCATGGTGCAGGAGAACGAAATGCACATCCCTGCTCTTATGAGCTTTCTGCACACACAATCTACAAGCATGGAGGATAGTATATTGAACAAACCTGAAGCGGGTGGTTACGCTGGGGTTCActttatccatccatcaatgGCTTGATTTAACCATCCACACATGAACAAATGACCATGCAAAAAAATTCAGTTCTGCTTAGATCATGTCAGATATGAAGGCACAATATGCACTTTTGAAAACATGGCTGCATTATGAAGGATTTAGAGTGAGGCTAAGGAAAAACTGTGCCATTTGTGTGTTCCAGTTATGATCTTTGGCAGTTTTCAAGCAAGCTGCTAagtattttcatatattttatggGGAGCAGTTTTCAAAAATAGTACTACTGACTGGGCaaggctgggcaatatgacgaTATAAATATTGCGataaattatattacaataCTCATTTCTGAGATATAGTagatattgtgattttttttataaattgatatatatttttaaataaactacaaacatttttccctctttccagTGGTAATTGATTTTCTAGACATAAAAGCAtcattaaacttttattttattggaacatTACTGCTTTGTTGGAAGTTTCTTATGAAACCTGTATATCATAATGCATATCATGTATCTTAGAGAATCgtgatatattttttgtcatatcgccctgCCCTTCCAATCCACAGACTGTCATATGTCAAATTACTTACTCATACACTAATGACTaatattcatcaaatattcTACAATGAGTAAGTAAAACATTACTTACTCAGAAACAGAGCTTAaaaggcaaaataaaataaaataaaataaaataacagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320194 lncRNA upstream 108646 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA upstream 110089 16135309 ~ 16136866 (+) True LOC117599367
TU320136 lncRNA upstream 251900 15994853 ~ 15995055 (+) True G270236
TU320120 lncRNA upstream 258100 15988653 ~ 15988855 (+) True G270229
TU319876 lncRNA upstream 258445 15988285 ~ 15988510 (+) True G270012
TU320370 lncRNA downstream 36184 16293872 ~ 16294107 (+) True G270437
XR_004579797.1 lncRNA downstream 69931 16327619 ~ 16364742 (+) True LOC117599337
TU320399 lncRNA downstream 70823 16328511 ~ 16328772 (+) True G270449
TU320453 lncRNA downstream 93560 16351248 ~ 16351459 (+) True G270495
TU320479 lncRNA downstream 127342 16385030 ~ 16385932 (+) True G270520
XM_026941804.2 mRNA upstream 171719 16048689 ~ 16075236 (+) True nrg1
XM_026941979.2 mRNA downstream 21393 16279081 ~ 16292173 (+) False ddx4
XM_026941980.2 mRNA downstream 21393 16279081 ~ 16292173 (+) False ddx4
XM_026941981.2 mRNA downstream 21393 16279081 ~ 16292173 (+) False ddx4
XM_026941982.2 mRNA downstream 21393 16279081 ~ 16292173 (+) False ddx4
XM_034312865.1 mRNA downstream 21991 16279679 ~ 16292173 (+) True ddx4
XR_004579771.1 other upstream 1475882 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2930739 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5676250 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6492365 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6822100 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 367221 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 367712 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 367794 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 368285 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 368367 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile