RNA id: XM_034312523.1


Basic Information

Item Value
RNA id XM_034312523.1
length 4370
RNA type mRNA
GC content 0.49
exon number 27
gene id pam
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16670317 ~ 16744667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCTCCTGAGCGGTTATTTTGGCCTGATGGCTCTCCTGGAGCTCTGAGGAGTTTGGAGTGAGATGAGCATTTGAGAGGATACGGAGGATATACGTCTCAGGATATCTGCAGCAAAACAAACGATTGTTCCAGGCGCTTTTCCAAGTTCACTCAACTTTTCCCGGACGTTATAAATTAACAGGCGAACTGAAATTCCCACGGTTGTGAAAGAAGCCTGACGCTGTGTCTGTGATATGCGCCATCTAACCTGAGGACGAGTGAGAATCTGCacgttccctctctctcctcctcctcctcctcctcctcctcctcctttctttttctgtctttttctgctACCTCTCTGTTTCCTgcctgctctgtctctcttttttgctCATTGTTGTGGCGGAGTGCCCCAGCGTGAATTAAGAGTGAACAGAGCTTCCAGATACGACACTTTTCGAgctgaatgagtgagtgataggaggaggaggaggagagaagagaacaaACCTGAGGGCAGTCCCGCCTTTGCTTACCTTCGAGCTGTGATAacaagaggagaggagagaggagggtgAAGCAGGTTCTAACGCTCAGTGTGTGGACCCAGAGCAGGTTTGATGCTGTGAGACGAGCGCAGATCAGCTAAACATCCGTTCCATTTGCTGAAACAACTCAAagagcgagtgagtgagagagagtgggagaggaGTGAATATGGGAGTCCTGCTGTGTAGCGTGCTTGTGCTGGCTCTGATCTGTCAAAATCATAGCTACAGTGTCAGAAGCCCTCTGGACAGGTACAAACGATTTgaagagatgtggtctgagccGAACGACTGCTCCCAGGCCAGGCAGCCTTTCGTTCTGTCCAACCCTTACAACTTCTCCTTGGATATCCGCATGCCAGGGGTCATCCCAACAGTGTCTGATTCCTATTACTGTATGGCTATTCCTGTGCCCACACCAAGGGAGTCCTATATAGTGGACTTTGTGCCACATGCTTCCATGGACACAGCCCACCACATGCTCTTATATGGCTGCAGAACCCCCTACTCCACCAAAGGCTACTGggaTTGTGGGACAGAACAGGGCACCTGTGAGGACGAGGCCAAGATTATGTATGCCTGGGCCAGAAATGCTCCACCCACCAAGCTCCCTAAAGATGTTGGCTTTAGAGTTGGAGGAGATACCAGGATTACCTACTTTGTGCTGCAAATCCACTATGGTGATGTCCATAACTTTCGAGATCACCATAAAGACTGCTCAGGACTTACCCTTAGAATGACTTCGAAACCGCAGCCCTTTATAGCTGGCATGTATCTGATGATGTCCGTAGACACCGTCATCCCTCCAGGAAAGACAGTAACCAATGCTGACATCGCTTGCACTTACTTATCATACCCGATGTACCCGTTTGCCTTCAGAACCCACACACATCGCCTTGGTAAAGTTGTTAGTGGTTACAGAGTTCGAAATGGACAGTGGACATTGATTGGGAGGCAGTCTCCACAGTTACCGCAGGCCTTTTATCCAGCCAGCAATGCCATTGACGTGAGATACGGAGACATGCTGGCTGCTCGCTGCGTTTTCACAGGAGAGGGAAAGACCTCTAAAACACATATCGGTGGCACTTCTAATGATGAGATGTGTAACTTCTACATCATGTACTACATGGACAGCAAGCATGCTGTGCCTTACATGGACTGCATGGACCATGGCAGCAGCAGTCTTTTCAGAAACATTCCTGCTGAAGCCAATGTTCCCATTGCTGTCAGCCCAGACCAAATGATGTCTATGATGCATGGCTCAGAGCATAAAGACGGCGAAGACGCCGCCACGCTCCAGCAGCcgaagagggaggaggaggaggttcTGGATCAGGGTGACTTCTATTCCCTTCTCTCCAAACTCCTAGGGGAGAGGGAGGACATTGTCCATGTGCATAAGTATAACCCCACGGAGGCCCATGCGGATCTGGTGGCCGAAATCGATAGCATAATGCAAAAGAAAGACCTGGGCTGGCGCGGGCCCAGGCTAGGCTACGCGCACAGAGACGGTGCAGTTCTGGTGAGGGACAGAGTGCACAAGTTTCACCAGTTAGAGTCCACTGTCAGGCCTCTGGGGACCAAGACTGTACCTGCCAGACTGCCAGGCTCAGGGGTGGCAATGGCCAAAAAACAAGGGACCCATCTGGAGGAGGTGACTAGCTGGCCGGAGGTGGCGCTTCAGCTGGGTCAGGTGTCCGGTCTGGCTCTGGACTCTGATGAAAACCTGGTTATCTTCCACAGAGGGGATCACAGATGGGGAGTCAACTCTTTTGACAATGACGCGTTGTACCAGCAGAAGTCCCTCGGCCCCATTCAACAGTCCACCATCTTGGTGGTGGATCCAGTCAAAGGCAATGTGCTCAAGGCCTCAGGGAGAAACCTGTTTTATATGCCACATGGTATCACAACTGATAAGGACAATAATTATTGGGTGACAGATGTAGCTCTTCATCAGGTGTTCAAAATTAGCAGCGATGGTAAAGAGAAGCCGCTGCTGGTTCTGGGAGAGGCTTTTGTGCCAGGCTCTGACAAGAGCCATTTCTGCCAGCCTACTGATGTCGCCGTGGACCCGGATACTGGCAACATTTACGTGTCTGACGGCTACTGCAATACCAGGATTCTCACATTCTCACCAGAGGGCAAATATCTGTCCCACTGGGGAGCAGGTTCACTGGACCGGCGGAGGCGTGTGCCCTTCCAGATCCCCCATAGCCTGGCCTTTGCAGCGGATAAGCGCGAGCTGCTGGTGGCTGACCGGGAGAACGGACGTGTGCAGTGCTTCATGGCCGACACGGGCGAGTTTGTGAAGGAGATCAAGAAAGATGAGTTTGGAGGGGAAGTATTCGCCGTCTCCTACTCACCTGCACAAGGTGGCTTAATCTACGTGGTGAATGGAGAATCAGCATACGGCCAGTCCGCCCCACTCCGAGGCTTCGTGCTCAATTATTCAACCAAGGAGATCCTGGATACATTTGCGCCAGACACACAGAAATTCAAAATGCCTCATGACATTGTCGTTACTAAGGATGGAAGCGTCTTTGTTGGGGACGCCGCCTCAGACTCAGTTATAAAATTTGTCCCATCGGAAAaaGCGGAGCACCGTTCTGTTAAAAAGGGTGGAATTGAGGTGCAGGAGATTGAAGAAACAGAGACGTTCGTGCAGGCCAAATTGAAGCCGATCCACAAGCAGATGGGCCACACCCCTGAAGTGACTATACAGAAACTACCCATGACTAAAGAGGAGGAGGCTGTGCCGGTTCAACAGACCAAAGCTacggaggagaaggagaaagacaaGGAGAATGAGAAGAAGAGTGCCACAACTCAGGGTCTGTCTCCTGCAGTCATCACCACTCTGCTCCTGCTTCTCCCCCTGGTGCTGGTCATCACCATCGGCATCTTCATCCGCTGGAAGAAGAGCAGGATGTATGGAGATGGCCATGAGGTGAAGCTGGAGCCATCAGGAACATCAGGAGGAATCTTGGGTAAACTCAGAGGCAAAGCTGCAGGGACGTTAAACTTAGGCAATTTCTTTGCAACCCACAAAGGCTACACACGGCAGGGCTTTGACCGTCTCAGCACGGAGGGCAGCGACCTGGAGAAGGATGACGAGGACGCCACTGACTCTGAGAATGAGGAATACTCTGCCCCACCTCCCCCCGTTTCCTCGTCCTAATGATCCGGTCCAGGCTCCGCCCCCTCAGTCCGTGCTCGAACCCTTAAAATGTACTGCAATCATATATGTAACTATACGCATTGGCTGccaatatatttaatttatttgtgcaGAACCTTTTTTTCTCAGTAGGATATACGACTgccaatttaatttatgattttaaGGGAGCAAACGCGTAGAGGAGCAAACACTGGTAGATTTAGGGATATAGCTATATGCTTACTATTAATGGAAGAGAAGGAGGTAgagttgttttaattttaatttgacagTTGTATGCCGATAATTTATCTTGATAAAACTTGATAGTTTTTTAAGTTTTCAGGTAACTGGTCCAGATGTTTATCTcttatttgtacatttgtgcCTTTTTGATTATGTATTTCGCCTTCTGCAGCACCTATATTACTACAGATGTGCCACTTTCTTCAAAGCGCTGCTATTGTCACCTGTATTTTGATTTATGTTGTGCCGcattaaatgaaaagaaaaaaaagaggattaTTAAGATGTATCTAAAGCTGTATTTACAACATTTTCCAAGCAGGATGTGAGATGTGTCTAATATTTGTTGTGACATACTGAGGTTTTATTGCAAGAATACTATTTTCAGTAACAATGTTATTTGTGTAATAAAGTGTCTGCAAAGCATCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0004504 peptidylglycine monooxygenase activity molecular_function
GO:0005507 copper ion binding molecular_function

KEGG:

id description
K24006 PAM; peptidylglycine monooxygenase / peptidylamidoglycolate lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320608 lncRNA upstream 43971 16625984 ~ 16626358 (+) True G270626
TU320506 lncRNA upstream 93089 16576363 ~ 16577240 (+) True G270536
TU320489 lncRNA upstream 159582 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 284397 16385030 ~ 16385932 (+) True G270520
TU320453 lncRNA upstream 318870 16351248 ~ 16351459 (+) True G270495
TU320717 lncRNA downstream 53178 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 316314 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 342728 17087395 ~ 17087922 (+) True G270856
TU320889 lncRNA downstream 354474 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320899 lncRNA downstream 383350 17128017 ~ 17138981 (+) True G270870
XM_026942067.2 mRNA upstream 75932 16591893 ~ 16594397 (+) True LOC113543669
XM_026941609.2 mRNA upstream 80335 16583036 ~ 16589994 (+) True reep5
XM_026941568.2 mRNA upstream 117811 16538769 ~ 16552518 (+) True zgc:114200
XM_026941909.2 mRNA upstream 135386 16518234 ~ 16534943 (+) True tpm2
XM_034312484.1 mRNA downstream 4253 16748920 ~ 16787635 (+) False ppip5k2
XM_034312486.1 mRNA downstream 4420 16749087 ~ 16787635 (+) False ppip5k2
XM_034312490.1 mRNA downstream 4420 16749087 ~ 16787635 (+) False ppip5k2
XM_026941691.2 mRNA downstream 4420 16749087 ~ 16787635 (+) False ppip5k2
XM_026941692.2 mRNA downstream 4420 16749087 ~ 16787635 (+) False ppip5k2
trnam-cau_39 other upstream 41434 16628824 ~ 16628895 (+) True trnam-cau_39
trnar-ccu_10 other upstream 41515 16628742 ~ 16628814 (+) True trnar-ccu_10
trnam-cau_38 other upstream 43454 16626804 ~ 16626875 (+) True trnam-cau_38
trnam-cau_37 other upstream 44203 16626055 ~ 16626126 (+) True trnam-cau_37
trnar-ccu_9 other upstream 44284 16625973 ~ 16626045 (+) True trnar-ccu_9
trnar-ccu_11 other downstream 343001 17087668 ~ 17087740 (+) True trnar-ccu_11
trnam-cau_40 other downstream 343081 17087748 ~ 17087819 (+) True trnam-cau_40
trnar-ccu_12 other downstream 343782 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_41 other downstream 343862 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_13 other downstream 344560 17089227 ~ 17089299 (+) True trnar-ccu_13

Expression Profile