RNA id: XM_026941774.2


Basic Information

Item Value
RNA id XM_026941774.2
length 3838
RNA type mRNA
GC content 0.44
exon number 12
gene id slc7a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 14656962 ~ 14673374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAATAACTTGAACATGTGATGTGTCAATGTGCTATTTGTAGGGCAGCAGTGAGGGAGATTGAGGTCGTTGGTAGACAGGAGTTCATACATAGATCTTGTACTTGTTAACAGTAGGCTGTGTGTGAGGAAACAGATCAGGTCAGGCCAGATCAAACTGGATTGGAGGAGCCATGGGTTTGCAGAAGCTTCTGAGTTTTGGCAAGCAGCTGCTGCGGGTGAAAGTGGTGGATTGCAGCTTGGAAGACTCTCGTCTCTCACGATGTCTTAACACATTTGACCTAGTGGCTCTGGGAGTGGGCAGCACTCTGGGTGCTGGGGTGTACGTCCTCGCCGGCGCAGTGGCACGGGAGAATGCGGGGCCTGCCATAGTGCTGTCCTTCCTCATCGCTGCCATGGCATCAGTGCTTGCTGGCCTTTGCTATGCTGAGTTCGGGGCACGAGTACCCAAGACAGGCTCAGCGTATCTATACAGCTACGTGACAGTGGGGGAGCTCTGGGCCTTCATCACTGGCTGGAATCTGATCCTCTCTTATATCATAGGCACATCCAGTGTAGCTCGTGCCTGGAGTGCCACATTTGATGAGCTGATCGGCAAACAAATTGAGTTGTTCTGTCGTCAGTACATGAGCATGAAGGTCCCAGGTGTGTTGGCTGAGTACCCGGATATGTTCGCAGTGGCCATCATTCTGTGTCTCACAGGCTTGCTGGCCTTTGGAGTGAAGGAATCAGCCACTGTCAATAAGGTTTTCACCTGCATCAATGTCCTGGTGCTGCTGTTCATGGTGGTATCAGGCCTGGTCAAAGGCACACTCAAGAACTGGCAACTGAATCCTGATGAGATTCTCAATGCCACCAACTCCTCAGGCTTCAATACAACAGAGTCCAAGGAGTTAGCTGAGAGCTTGGGAATGGGTGGATTTTTCCCATTTGGCTTCACCGGAGCCCTCTCTGGAGCTGCTACCTGCTTCTATGCCTTTGTTGGGTTTGACTGCATTGCCACAACAGGTGAGGAGGTGAAGAATCCTCAGAGGGCCATCCCCATCGGCATCGTCTCCTCTCTCCTCATCTGTTTCGTCGCCTACTTTGGTGTGTCAGCTGCTCTCACTATGATGATGCCATACTATATGCTGGATAGGAAAAGCCCAATTCCTGTGGCCTTTAAATATGTAGGCTGGGAGGGAGCCACCTACGCAGTGGCTGTAGGCTCTCTGTGTGCCCTCTCCACCAGCCTGATTGGTACCATGTTCCCAACGCCTCGGGTCTTGTGGGCGATGGCAGATGACGGGCTCATCTTCAAATACATGGCTGAAATCAACCCGAAAACAAAAACTCCCTTACGTGCTACTCTAACATCTGGCTTTTTGGCGGCTGTCATGGCGTTCCTGTTTGACCTAAAGGATCTGGTTGATCTTATGTCTATCGGCACGCTCCTGGCTTACACTTTGGTTGCTGCATGTGTGCTGGTGCTCAGGTATCAACCAGATCAGCCGACTCAGGGCTACCAGATGGCAAGCACACACGAGGAGCTGGAGATGAGAGAATCCTTTAGTACTACGAGTATGGGCATTCTGCCTGGCATGGAGGAGAGATTCAGTTTCAAAACGCTGCTTTTCCCTATCAACACAGAGCCGTCTGGCCTTTCTGGCTCTGCCGTCAATGTCTGCGCAAGCCTGCTTGGTTTCCTTATCCTGGCTTTCTGCATCGTGGCTGTGCAGGGTGGTACTGCCAGCTGGAGCATAGCAACCCTCACTGTGATTGCCATGGTTTGTCTCCTTCTCACTTTCATCATCTGGAGGCAGCCGGAGAGTAAAAGCAAGCTCTCGTTTAAGGTGCCTCTGTTACCCTTCCTCCctgtggttagcatgtttgttaatgtttatCTGATGATGCAGCTGGACAGAGGGACCTGGATACGCTTCTCTGTGTGGATGTTAATTGGCTTTATTATCTACTTTGGCTATGGAATATGGCACAGCTCAGAAGGTGCTCTGACTCATTCCAGTCCAGACGAAGAGCCTGATGTGTGTAAATCCACCAGTACTTCCCGGGATGCCATGTCCCCTGAAAAAGAGGCGTTCCTCTACACCAGACAGGAGGATGGCGATGATGAAGACGGTGAGATATGATATTGAGGATCAGATGAGCTTCAGTACTGCCTGCTTGACCTTCTCTCTGAACCGCAACACTCAGGGCCGCTGATGAGCACAAACTATTATCAGACTGAGCATGAGGAGATGCAGCATTGTGGTTGATTTAGATAACTCACTTCCTCATGAGAGGCTGAGAGCCCTGTTGTTGGATAGTGATTTTTGGGATTCTAATTTTCaaccaaaaaagaaacaagaacagTTAAAGGACATTTTGTCCGAAGGCAACTTAGAAATTGTTGTTAGGTTCAGTTATGTACTGAGTGTCCAGTTCAAGACAGTGACCACTGTGTTCTCTGATGGCAGCCTTCATCATCTGATTGcacatttacaaaattacaCACGTTACAACTGAATTAGAATGTTACATACACACAAGTGTCGCAACCAAATCAGGGACACTTTGCCTTCCTTGGACCTCTATTTAATAGTTTAGTTTGTTTAATAATGAAATCTACTTCACACATGGCTTAGTGTTCCTTGTTTAATATTCTGTTTAAGACCACACTCGGTTTCTGAAACGTTATCTGCTAGCCTTAGCTGCTCTGATCCAGATTTAGTACAACAGGTATTTTTAGAAAGCCCTCGCTACCTTTTATTGGTAGTGCCACCTGGTGGAGTGGTATTGAACACAAATGGAAGATTGATGCTCTTTACAGACTTATTTGCCTCATGTAGAGTTTTTGAGGCTGCTAATTTAAATAGTCATCTCAAGAATATTTGAACAGAGTTTGTAGGACTAAAACCTTTTAGGTCAGGCTTGGGTAATAGAAACTTCTCCATAAGCTGCTGATTATTGTTGAAGATATTAATAAGATTAATCATGATAAATGAGGATATGGCAGACATTGACataattttttcccctgtggTAAACTCCTGTGGTTTCCTAACACAGATAAATTAAGTGCCTTACATAGATTCCaaagattaaaagattaaacaaaGTATGTGTGATAACATGCATCAGGTAATCTACGATCTACAGTTACAAATGACttcaaatttataaaaattagtATCAGTCATGTAATAACCACATCACCTGTAATATTATAACCACATTCACCTGACATTACCCCACACTGAAAAGGCCACAGATTTCATTAGTCGTAATTAAGCCCAGTAAAGAATTGCATGTGGTAttataattaaggaataaaacttaaTTGGGTGGTGTAATGAACGACATCCTAATGAAGcatatcccaaagtgttttattcctcttataccacagtaattttccaacaactacatttattaaagaatgacacctaATACTAATCGATatatttatagatacatttgaTGTTGTAGAATATCTGCAAAACAACTCATATTAGATGCAGTCTTCCACCAGCTGAGCTGTGAGTGGAATTCAGGTTTCTTAACCAGagttattgaattatttttccCTTGTAGAGAACAACTAGATTTATAGTAATCTTACAGCCCATTGAGTGTGTACATGTTTCTTGGTTTAAATCATGTAATGCTGTTTACACCTCACTGTTCTTTTTTGTCATGTTAGAACAgagtatttgttttttgttttttggaccatttctgctgttttgtttgtgtacTATAAAATCCTGAAATAGTTGAGATGTGCTGTAGCTCAAATCACTGTACCTTGTACCATATACAGTACCTTTggtactgtaaataaaattatgttagctata

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579796.1 lncRNA upstream 56964 14598607 ~ 14604363 (+) True LOC117599336
TU318977 lncRNA upstream 63509 14596964 ~ 14597818 (+) True G269268
TU318956 lncRNA upstream 104978 14555486 ~ 14556349 (+) True G269251
XR_004579837.1 lncRNA upstream 714304 13942685 ~ 13947023 (+) True LOC117599376
XR_004579829.1 lncRNA upstream 797692 13859796 ~ 13863635 (+) True LOC117599363
TU319137 lncRNA downstream 109587 14782961 ~ 14783685 (+) True G269393
TU319140 lncRNA downstream 112273 14785647 ~ 14786195 (+) True G269396
TU319183 lncRNA downstream 187381 14860755 ~ 14863006 (+) True G269431
TU319360 lncRNA downstream 454923 15128297 ~ 15157245 (+) True G269569
TU319374 lncRNA downstream 500894 15174268 ~ 15174492 (+) True G269583
XM_026941818.2 mRNA upstream 6779 14634491 ~ 14654548 (+) True paxbp1
XM_034312338.1 mRNA upstream 722284 13914008 ~ 13939043 (+) True ltn1
XM_034312339.1 mRNA upstream 726943 13914008 ~ 13934384 (+) False ltn1
XM_026941712.2 mRNA upstream 756472 13899564 ~ 13904855 (+) True slc25a1a
XM_026942071.2 mRNA upstream 771346 13884461 ~ 13889981 (+) True si:dkey-175g6.2
XM_034312822.1 mRNA downstream 1731 14675105 ~ 14731263 (+) True mtus2a
XM_026941707.2 mRNA downstream 62059 14735433 ~ 14742688 (+) True LOC113543478
XM_026941916.2 mRNA downstream 88939 14762313 ~ 14771073 (+) True vps36
XM_026942044.2 mRNA downstream 99528 14772902 ~ 14779587 (+) True LOC113543654
XM_026942045.2 mRNA downstream 99528 14772902 ~ 14779587 (+) False LOC113543654
XR_004579830.1 other upstream 1345111 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 4090622 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 4906737 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 5236472 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 88939 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 1951535 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 1952026 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 1952108 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 1952599 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile