RNA id: XM_034312563.1


Basic Information

Item Value
RNA id XM_034312563.1
length 6900
RNA type mRNA
GC content 0.52
exon number 33
gene id LOC113543513
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15550925 ~ 15753891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCATTTCCTGCTCATTTCATTTCTGTATATACTCTACTGCATTCTCTGTTATTCTTGCGACTCCAAGTTATTTTTTCTATGGTTTCTTggtttcttccttccttctgttttttttcttcgttTGCCTTTTGTTATGACCACAAGCCTGTTTTTGACTTTGACCTGTAAAGTTGGATTTGTTATTCAAAGGAATTCACTCCCAGCAGCCTCTCTAACtccatttgggggaaaaaaataggcCTACTTACTTAAGTTACTGAGGCTGTGTACTTGCTGTgcgtgtgtctgcgtgtgtgtgttcatacctGGACCAGTGGACTGGCTGGCTCTGATGCCCCATTGCTTCACGGTGAAAGAAGGAGGGCTGTGTGAAGGGTGATGCTGGGACAGTGAGCAACATGCCAGTCGCAATGCCAGGTGCCATTCTCCTCATCATTGCTGCTTTACTGGGATTGGCTGGCTCAGAGAAACCAGAAGACTCCAAGACAGATATCAGTGGGCAGAATGGGCCACATGAAgcaaccacatctgctccaccTTCTGACCATGATGAGGACAACTCACCTGGTTACACTGGTTCTCGTCTCCGTCAGGAGGACTATCCCCCTCGGATTGTGGAGCACCCATCAGACCTGATCGTGTCGAAGGGTGAGCCGGCCACGCTGAACTGTAAGGCCGAGGGCCGACCAGCACCCACTGTCGAGTGGTATAAAGACGGTGAACGCgtggagacagacagggacaacCCACGCTCGCACCGTATGCTCCTGCCCAGCGGCTCGCTCTTCTTCCTGCGCATCGTGCACGGCCGCCGCAGCAAACCCGACGATGGCAGCTACGTGTGTGTGGCCAGGAACTACCTGGGGGAGGCGGTCAGCCACAACGCTTCACTGGAAGTAGCCATCCTGCGTGATGATTTCAGACAGAACCCTGCTGATGTGATGGTGGCTGAGGGGGAACCGGCTGTGTTGGAATGCCAGCCCCCTCGTGGCCACCCAGAGCCCACCATCTCCTGGAGGAAGGATGGAGCCAACATAAACGACCGAGACGAGCGCATAACGATCCGAGGTGGAAAGCTGATGATTACTAATGCAAGGAAGAGTGATGCTGGGAAATACATCTGTGTGGGAACCAACATGGTGGGAGAGCGGGAGAGTGAGATTGCTGAACTGACTGTTTTAGAGAGACCCAGCTTCACGAGGAGGCCCAccagtgtggtggtgctggcCGATGAGAATGTGGAGTTTCGCTGTGAGGCCCGCGGTGATCCTTTTCCCACCGTCCGCTGGAGGAAGGAAGATGGAGAATTACCAAAGGGGAGGTACGAAATCCTTGAAGACCACACGCTGAGCTTGCGACGTGTAACTCCGGCTGACGTGGGCTCCTACAGCTGCCTAGCCGAAAACATGGTGGGCAAGGCTGAGGCTTCCGCTACGCTGACTGTGCATGttatgTCTGTGCCCCCTACGTTTGTCATTCGGCCCCGCAACCAGGTGGTGGGTGTGGGCCGAACGGTCACGTTTCAGTGTGAGGCGATGGGCAACCCACAGCCGGCCATATTTTGGCAGAGAGAGGGCAGCCAGAACCTTCTGTTCTCCTACCAGCCCCCGCAGCCCTCCAGCCGTTTCTCCGTCTCGCAGACAGGCGATCTCACCATCACAGACGTGCAACGTGTCGATGGAGGACAGTACAGCTGTCAGGCACTCAACATCGCTGGCAGCGTCATCACCAAGGCCCTGCTGGAGGTTACAGACGTGGTCTCAGATCGGCCTCCTCCAGTGATTCGACAAGGTCCAGAGAACCAGACCATAGCTGTAGATGGGATGGTGTTGCTGAATTGCATAACAACCGGAACTCCTGTTCCAACGGTGCTCTGGAAGAAGGACGGGGTGCTTGTGTCCACCCACGACTCACGCATCTCCCAGCTGGACACCGGAGCTCTGCAGATCCGCTATGCCAAGCTCAGTGATACAGGAGTGTACACTTGCGTGTCCACCAGTCCCAGCGGGGAGGCGTCATGGAAAGCGTACCTGACTGTGGAAGAGTTTGGAGTGGCGGTCCAGCCTGGCAGACCCACAGACCCAAACCTGATCCCCAGTGCACCCTCCAAGCCCGAGGTGACAGATGTTACTCGCACCTCTGTCACATTGACATGGAAGGCCAACACAAATGGAGCCACACCCACGTCTTATGTCATCGAGGCCTTTAGCCATGCATCTGGGAGTAGCTGGGTGACTCTTGCTGACCACGTGAAGACTGAATCGTTCATGCTGAAGGGTCTAAAGCCTAGTGCGGTGTATCTTTTCCTGGTGCGGGCAGCCAATGCTTACGGCTTGAGTGACCCCAGTCCTATATCAGATGCCATACGAACACAAGACACTCCGCCCACCATACAGGGAGTGGACCACCGTCAGATCCAGAAGGAACTGGGGGATGTTGTGGTTCATTTGCACAATCCCACCATCCTCTCATCCTCCTCAGTTAGATTGCAGTGGACGGTGGAGCAGCAGTCTCAGTACATTCAGGGCTACAAGGTCATGTATCGGCCATCATCGGAGTCCGGCGAGCCCCGTGGTCAGTGGGGAGTGTTTGAAGTGCGCACTCCTGGCGAGGACGGTGCTGTTGTACCTCAACTCAAGAAGGGCGTCACTTATGAGTTTAAAGTGCGTCCATTCTTTGACGAATTCCAGGGAGCTGACAGTGAAGTGAAGGTGGTCAGAACGTTGGAGGAGGCTCCCAGTGGCGCCCCGCGTGGAGTTACCGTCACCAAAAGCGACACCAACGGGACAGCCATCCTGGTCGCCTGGCAGCCACCTCCAGAGGAGGAGCAGAACGGAGTGGTCCAGGAGTACAAGATATGGTGCCTAGGCAATGAGAGTCGATACCATGTCAACCGTACCGTGGACGGCTCCACTTTTTCCGTGGTCATCCCCAGTCTGTCGCCTGGCATTCGCTACAGTGTGGAGGTCGCTGCCAGCAATGGAGCTGGGCCAGGGGTCAAGAGTGATGTCACCTTCTTTCAGCTGGACTCATTTGGCCAGGTGTGGGACAGTTTCGATGACCAGGACACTTTTTCCAACATCTCTGATGTGGTGAAGCAGCCTGCTTTCATCGCAGGCATCGGCGCCACCTGCTGGGTGGTGCTCATGGTCTTCAGCGTATGGCTGTATAGGCACCGGAAGAAGAGGAGCGGCCTCAGCAGCAGCTATGCTGGCATTCGTAAAGttccatCATTCACCTTCACACCAACAGTGGCATatcagagaggaggagaagctgTTTGCAGTGCCGGACGTCCTGGCCTACTGAACATGGGAGATTCAGCTAACCAGCCATGGCTAGCTGACTCTTGGCCCAACGCCTGCGCTAACCACAAAGACTGCAGCATCAACTGCTGTAATGGTGGCAATGGAACCAGCGACAGCAACCTGACCACCTACAGCCGTCCAGctgaTTGCATTGCTAACTACAACAGCCAACTGGACAATAAGCAAGGAGTGCTGATCGGCTCCGACTCAGCTGTATACAGCGATGTAGACCTGTCTAACAAACTCAATGAGATGAAGACCTTCAACAACCCCAGCATGTGCTACATGGGGCCCGGAGGCAGCCCACCTACCCCATATGAGCCCACTCCTTATGCGACCACCCAGCTCATCCAATCAAACATCATGAGCAAGAACAGTGGTGCAGGGCCTGGTGACTTCTGTGACAAGCGCTGGAAGCCCCAGCAACCAAAACCCCCAGAACTCCCGTCACAGTTACAGTTTAATGTTATGGAGCAAAACAGGCTGAACAAGGATCATTACAGAGGAGGTGAGGTCAGTCTGCCTGCCACCATTCCCTATAATCAGGCAAATGAGCACAGCTCTGCAGGGTCCTACCACAGCTCTGATAGAGCTAGCAACAGCACCTCCGggagtcaaaatcataaaaaaggAACTCGCACCCCTAAACTGTCTAAACAGAGTGCAGTGAACTGGGCTGAGCCACTGCCTCCACCTCCTATCAACCCCCTGACCAGCCGCAGCTCTGAGGACTACCTGCAGTCCATGGATaagagTTTTGATCCAGACTCGCAGAAGCTTCAGACCCGCATGTACCTGCACCAAGGggagacagaagaagaagaggaagagcaggagAATCTGGTTAGGTGCCCCACTCCACCTGTTAGAGGGGCAGCCTCATCCCCTGTGGGAATGTCCTACAGCCACCAGTCCACCGTCACACTCACTCCCTCTCCTCAGGGAGAGCTACACAACAACCAGGAAGATCGCAGACGACACATTGCGAGCCCCCCTCCTCCATCCCAGGCCCTCTCGCCCTCGCACACCTATGCCTATACTGATGGTGATGACGAAGACTGCGATCACACAGATGGTGAGTCAGGCCAGAGGCAGTACCAGCAAAACCCAGGATCCCACTACCAGCCTCAGCAGCagatccagcagcagcagctccatCTCCCACGCCGGCTGCATCTGCACAGGGGCCTGGAGCAGACTCCGGCCTCGAGCACGGGTGACCTGGAGAGCTCTGTCACTGGGTCAATGATCAACGGCTGGGGCTCGGCATCTGAGGAGGACAACGGCTCATCGGGCCGCTCCAGTGCCATCAGCTCCTCCGATGGCTCTTTTTTCACTGATGCTGATTTTGCCCAGGCTGTTGCCACGGCGGCTGAGTATGCCGGTCTGCGAGTGGCCCATTATCCAGGAGCAGGGCCTGAAGACATTGGAAGAGGCGGTCAAAGATACCACATTGGCCACCGTCCCAGTAGCCCAGTGTCCACGGACAGCAACATGAGCACTGCAGTGATGCAGAGGAAACCACACAAAAGGCACAAGCAACATGCAGCTGGTCACCAGAgccaacagcagcaacaacaacaacaacagcaagcAGATGAATATACAGATGACCCATCAATGCCCCTGAGCCCCTCCTCAGTTGGAATGAAGACCACCAATCATGGTTCCAGGTGTGGATATGAGGAAAGGGGTGCAACGCTGCCCAGGATGGGCTGTGGCGAGTCCAGAGACAGGCGGGGAAGTGCAGGGGGCTACCGGACAAGAGAGACCTCAGCTGAGCGACGAGGGGAGCAAGATAAACACCGGAACACGCACGGAGGAAAAGGTGCTGGCAAAACACGCCAACATGCAGTTGCAGAGGACATTCCGCCATACAACCGGCCATCATTCCCCACAGCACAGGGGCAGAGGGAGACTCCCAGCTCCTCCAGTTCAGTGTCGTCCCGGGGCTCTGGGGGCCGTCGGCGAGGGGAGGCAGGATCAGGAGGCCGTAAAAACCCCAATGATACAGGGCTCCCAAGTTTGGGGGCCTTTTCCCACAAGGAAGAAGAGTTAGAGCTGCTGGAGAGTTGAGGATCGAGTCAGGATGAGAAAAAGGATCTCCAAGTGGAGAATCATCTTCGAACTGTGCACCATACACAATTCAGACCATCTACAGTCATTCACAGTTATGTAAATGATCTGTTCTGTCCTTATAGGCAAAAAAATGACCAATggttaatgttttctttttttttcaatctgctTCAATATTTAATCTTTTCAGTGTGAGCAAGAGGGAAAACTGGATGCTCTCAAGTTTCTTTTTAAGTAGGTGATTCTTTCTGCTTTAAAGCCCCATTGACTGGTGTAAGTTTGTGCAAAGGTGTGATGTTCCCACACAGGAGCATCATCTTTATAATCTGCTGGTGTGAGTGTAATAGAAGCTGCGAGTGGGGGAGCAGTGGACCATCGTCAGTACAAAGAGAGGTCTCTTCACTCATACTGTGATACAGTACTTCAATATGGTCTTCCCTCTCACTGCTCTCTAAACGTATTTTCTGGTAATGAAAACTCGGGCATGAGGGTTGCGATTGTAAATTTACCAAATCATTGAAAGAAGTGCTgccattagatttttttttttacaatgcactgttgtcattttgttatttgatgttgttattgttaatgTATGTTCTATTTTTTGTCTTTGGTTTCAAAAGCacaatcactaaacatttatttttaaaccattcTTAGCTATGAAGCGCTCCACATTACATGAGGAGTGGAATAAGTGGCGTCTCATTGAGCATTGTGTTTGAGATCGGATGAGAAAATGGGCTTATTTGCTTCGTTTTATTTACGCAAATGAACAGGACGGAAATCGGGATGACTCTCTCCACTTTGGGTCTCACGCAAGCCGTGTAAACATGATATACCTGAATAGAGATAGACCGTGGAGTGGCAATCCGTCATCTCATTACCAATGATGACATGTTACATTAGATGAGACAAATGCACTTAAATGAGGGTGAAACAAGAAAATGTGCAATGGGCAATATCGTTTTCGATCTAGGAGGCTTGGATTAGGAGTGTCCTTTCCGTTTTGTGTTGAGAAGTGATGATCCCAGAACAAGGTGTGCACtgtaataataagaagaatgtCTGCCACAACCAAACAGCAAGCCTTTTGGGGCTTCATCTGTCCCTCTGCGGGCTCAACTCTGTCTATACTGTATAGAAGTGATGTGGACTTCGTTGTGGGATGGGGAGGGTGGAAAACCTTATCTAGGGATTCCTGTGGTAGTGCAAAGCACCGCTGGGCTCACCTAGCACACAGCTGCTTCGGTTTGGTTTGAATCCATGCTCTTGCAGTACCTTTTTTCAATTGATGAACAATGTGTGTGAGAATATgttctctggaaaaaaaaaaataattgtgctGTCCATCATTGTTTGGTGTTTActatgttaaagaaaaaaagtacaacTGCTTTAAATTGTCAGCCATAACTTTTCATGACTGATAATCTCatatttagaataaaataaaccGTGTCATTTCCCaccttatttattattaaaacatttttcaaatgccA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319693 lncRNA upstream 64362 15432044 ~ 15486563 (+) True G269852
TU319452 lncRNA upstream 246051 15299894 ~ 15304874 (+) True G269642
TU319448 lncRNA upstream 252598 15296544 ~ 15298327 (+) True G269641
TU319449 lncRNA upstream 252598 15296658 ~ 15298327 (+) False G269641
TU319450 lncRNA upstream 252598 15296658 ~ 15298327 (+) False G269641
TU319847 lncRNA downstream 168170 15922061 ~ 15929335 (+) True G269989
TU319853 lncRNA downstream 175551 15929442 ~ 15929868 (+) True G269993
TU319854 lncRNA downstream 176049 15929940 ~ 15930641 (+) True G269994
TU319861 lncRNA downstream 186614 15940505 ~ 15941293 (+) True G269997
TU319862 lncRNA downstream 187568 15941459 ~ 15941659 (+) True G269998
XM_026941970.2 mRNA upstream 65802 15474329 ~ 15485123 (+) True apbb1
XM_026941972.2 mRNA upstream 65802 15474329 ~ 15485123 (+) False apbb1
XM_026941902.2 mRNA upstream 77125 15462251 ~ 15473800 (+) True LOC113543573
XM_034312697.1 mRNA upstream 88851 15437154 ~ 15462074 (+) True LOC113543572
XM_034312846.1 mRNA upstream 229372 15310141 ~ 15321553 (+) True aldh7a1
XM_026941627.2 mRNA downstream 160333 15914224 ~ 15919560 (+) True ubxn8
XM_026941830.2 mRNA downstream 204667 15958558 ~ 15987780 (+) True wrn
XM_034312645.1 mRNA downstream 239617 15993508 ~ 16075236 (+) False nrg1
XM_034312644.1 mRNA downstream 239620 15993511 ~ 16075236 (+) False nrg1
XM_034312649.1 mRNA downstream 239620 15993511 ~ 16075236 (+) False nrg1
XR_004579771.1 other upstream 779852 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2234709 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 4980220 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 5796335 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6126070 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 871018 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 871509 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 871591 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 872082 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 872164 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile