RNA id: XM_026941792.2


Basic Information

Item Value
RNA id XM_026941792.2
length 3664
RNA type mRNA
GC content 0.43
exon number 9
gene id arfip2b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10485024 ~ 10505442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAAATAGGCTCTGTCGTTGTCGTCAGCGCCGAAAGGCATTGTGGGCCGGTGAAGGAGGGAGGTAgagaagagagcgagagagagcgagagagagggaggggggtTGCTTTTCCGAATGAGAGCTACAAACAAGCCGCTAGAGACAAGAGAATCCGCTGAAGATGAGAAATCCCTgataaaaatacagcaacacGCTTAGCGTTTCCTCATGCACCATTTCATTAATCCCGGGTTTGTTTTGGTCTGTCAGAGTcagaggcagaggcagagtCAGAGGCAGCTCGCGCATGGTTGGCTGTAAACTAGTCTGCTGCTTCACCTCATAGCAAACCTGAAGACTGGAAACACTCAGTGACACTCCAGCATGACCGACAGTATCATGAGCAAAGCGGCCACAATGGAGATCCCTATCAACAGTAACGGGGACAGCAGGACTCTGGGCGAGGATGATGGCCTTGAACAGGCTCAAAAGGTACAGTGGGGCCTAAATGAGAAGGTAGGGCGTCCCCCAGGCCAAAGGGTGAGAAGCGCACTGGTGGAGGGGTCCGAGCCCACCGaggctgaTTTGCAGCAGGTAATGGTATCCGGGCCTAACCTCAATGAGACCAGCATTGTATCAGGTGGCTATGGAGGCACAGCAGAAGGCATCATTCCTACTAGCTCTATCAAagGATCCAGCATGCACCACAGCAACAGTTCGTCCGTGATGGCAGAGGAGCCCACGAGAGGTGTCGCTGTGGAGAAGTTTGACATGATGAAGAAATGGGGCCTGAACACTTATAAGTGCACTAAACAGATGATCTCGGAGCGATTCGGCCGTGGCTCTCGCACTGTAGATCTGGAGCTAGAGGCTCAGATTGAGGTTCTGCGAGACACCAAGCGCAAGTATGAGAACGTGCTGCGCCTGGCCCGTGCACTCACTAATCACTTCTACAGCATGGTGCAGACACAGCACGCACTCGGAGACACGTTCGCTGACCTCAGCCAGAAATCTCCGGAGCTGCGGGATGAATTTGGCTACAATGCAGAAACTCAAAAATTGTTGTGTAAGAACGGAGAGACCCTGCTGGGCGCCATCAACTTTTTCGTATCCAGCATCAATACACTCGTCAACAAGACCATGGAGGACACACTCATGACCATCAAGATGTATGAGAACGCAAGGTTGGAGTTTGACGCTTACAGAGCCGATTTGGAAGAACTGAACATGGGACCACGGGACGCTATGACCGTAGCGCGTATCGATGCCGCGCAGCAACAGTATCAGATCCAAAAGGACAAATATGAGCGACTGCGCAGTGACGTTTCCATCAAGCTCAAGTTCCTGGAGGAAAACAAGGTGAAAGTGATGCACAAACAGCTTCTCCTTTTCCACAACGCAATCTCGGCCTACTTTGCTGGCAACCAGCAGCAGCTGGAACAGACCCTCAAGCAGTTCAACATAAAGCTGAAACCTCCCGGAGCCGACAAGCCCTCCTGGTTAGAGGAGCAGTGAAAGTGCTCATAGTGCCCTCAGTCCTTCTGCAGGTTATCCAGACAGAGCAGGCAATAGAATAACGAGACAGATGCAGCCTAGCCGCTATGGCAGCAAGGTAGCGAAAGGCTTACCATCCTGTAGCTGTTGTAGGAGCCTGGGACCCAAACTGCCTTTTCCCTCCATactttcctccttttcttcctctgcCTGACTGTCTCTTTGCTGAAATTGTGTTTGACCTTGAGAATAAGCACTACTTGTATCTACTTCACCCTAAAGGCTTAGTGACAACAACTGACCAAATCCTCCAGGAAATAATGTGTCAATCAGAACTCTAGTAGACTTTcaacttttctctctttctctctctctctctctctctctctctctctctctctctgtgctaaGTTCTCAACCCATTGACCacaaaacaactgtttttttcccccattactTTTCTCCACATGCTACATTTGGCTTCGGTGCCTGGACTTGTAGATGACTGAGCACACTTGGTCctaattttcaaaaaaaatgaattactaGTCAGGTTGTAAATGGCGTGTCATTTATTTCGTGAATCTCCTGGGAAATTTGGGACATGGCAAAGATGTGTATGATTCCATGatgcagaaggaaaaaaaaaaaattcccaactGTCATAATAATTGATCCAGTTGGTGCTTTTTGCATGATTGGATTCCTGAGTAAGCCATGTGTCGGTTGTTGAAAATGAGTCGCAACTTTATAACTTTTATGTtatgcatgttatttttttaggtTAGAACCACACacccattttcattttttttttcttcaagaagtgtatatgtgtgtgtccttcttCCTAACAGATTCTGTTGAAAAGAAAGCTGCAGGTGTTTGTAATCACTGTTGATTTGCTCTCCAACAATTCTTATGAACTCCTAATCATCCAAATTAGACAAGCTAGAAGTATTGTATACGGTAAACCAGTATGACCTGTATACTGTGATACGGGAATGCtgacactatactatactggtTTAAATatcacaaacattatttttaggtATTATCAAAAGCAAAGAACTATCTTCTTTAGTGCACATAAATCCATGAACTATCCAAATAACTTGATGTTATCATCTAATTTCATCAGCTGTGAAATACGGAGGCTGTAAGCAGACACAGTGATGTATGACATCTAAGTTAGTGGCTTGTACAGTCTTCACAGAATTCATTCCCTTACTCCGGTGTGTTTTTCAATCCTGGTCCTGAAGTTCCCCCACCCTCcacattttagtctttttcccCACTCTCACTCTATCTCACATGATTTGAGTCATCAGCTAGGTAACAAGTCTGAACTAGGTTGAACTGGGTGAGTTAGATGAGGGGAAGCTCCAGTACTGCTTGACCCAGATTAAGAAACACTACCCTgctctaaaataatatttatattcttttactTTGAGTCTAACATCCaaagttggggaaaaaaaaaagtgttcagttGTGTTTAGACCATTTGCATTCATTCGTCGTCCATTCTCAACACTTCCACACTCAACTCCCAGGACATGTGCCAGTCTGTGGGTGTGTGACACAAGACAGTTGTGATTAAATATTGTGGTATGTACTAATTTATGTATGTTTTGCTTCTGTTTGTATATCTGTTTCTTTAAGTTAACAATCAATGAGTAATCCAGgaagtatagtgtagtgtagtctatatgatttattttatatatttggttTTGATTAGAGTTGCCAGTGATTAACACCGTTATTAATCTCTCCATAACAAACTGTACACTACAGTGTCTGTTAAGTCTTCAGTGGTCATtcattggtgtttttttttttttttttttttttttttttaaatgaagctaACTTTTTGTTTGAAATCCACATATTTCCCACTTGtcttatttataatgtattttattttattatttttttttttttgccaagatGAACCcacaaaattatattttgccTTCATTTAATAGTCAAATGCCTCCTAAAATGCGACActgtaaaaataacacaaaatatgaTGCACACTAAGAGGGTTTATTTATTGTATCAGATTTTCCCACAGTTCATCAGCCCCTGTCAATCCAATAGGCTGAAATCTATTTGTCTTTGGggatattttagttttaaacatTGAGATGGACTATACATTTGAggtaaa

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315885 lncRNA upstream 481690 10003146 ~ 10003361 (+) True G266580
TU315784 lncRNA upstream 539472 9944113 ~ 9945579 (+) True G266499
TU315779 lncRNA upstream 544751 9937395 ~ 9940300 (+) True G266497
TU316165 lncRNA downstream 41379 10546821 ~ 10547182 (+) True G266802
TU316250 lncRNA downstream 66449 10571891 ~ 10572147 (+) True G266869
TU316252 lncRNA downstream 75417 10580859 ~ 10581182 (+) True G266871
TU316276 lncRNA downstream 161376 10666818 ~ 10668314 (+) True G266892
TU316286 lncRNA downstream 227095 10732537 ~ 10734630 (+) True G266901
XM_026941817.2 mRNA upstream 36886 10353267 ~ 10448165 (+) True dchs1b
XM_026941579.2 mRNA upstream 164880 10303687 ~ 10320171 (+) False slc46a3
XM_026941715.2 mRNA downstream 1784 10507226 ~ 10519216 (+) True fhdc3
XM_026941838.2 mRNA downstream 14576 10520018 ~ 10554251 (+) True trim3b
XM_026941837.2 mRNA downstream 21554 10526996 ~ 10554251 (+) False trim3b
XM_026941835.2 mRNA downstream 29115 10534557 ~ 10554251 (+) False trim3b
XM_026941839.2 mRNA downstream 29115 10534557 ~ 10554251 (+) False trim3b
XR_004579824.1 other upstream 730461 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1060196 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1060196 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1148761 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 1815254 8668814 ~ 8669797 (+) True G265807
TU316249 other downstream 63586 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 2810496 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 4256871 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 6119467 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 6119958 16625400 ~ 16625472 (+) True trnar-ccu_8

Expression Profile