Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941802.2 |
| length | 894 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 1 |
| gene id | LOC113543522 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 13504657 ~ 13505550 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K11252 | H2B; histone H2B |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU318168 | lncRNA | upstream | 29159 | 13432734 ~ 13475498 (+) | False | G268580 |
| TU318179 | lncRNA | downstream | 15602 | 13521152 ~ 13526385 (+) | True | G268587 |
| XR_004579829.1 | lncRNA | downstream | 354246 | 13859796 ~ 13863635 (+) | True | LOC117599363 |
| XR_004579837.1 | lncRNA | downstream | 437135 | 13942685 ~ 13947023 (+) | True | LOC117599376 |
| TU318956 | lncRNA | downstream | 1049936 | 14555486 ~ 14556349 (+) | True | G269251 |
| TU318977 | lncRNA | downstream | 1091414 | 14596964 ~ 14597818 (+) | True | G269268 |
| XM_026941800.2 | mRNA | upstream | 1270 | 13494721 ~ 13503387 (+) | True | zpr1 |
| XM_026941950.2 | mRNA | upstream | 11540 | 13491329 ~ 13493117 (+) | True | pwp1 |
| XM_026942053.2 | mRNA | upstream | 53864 | 13448733 ~ 13450793 (+) | True | bsx |
| XM_026942052.2 | mRNA | upstream | 473977 | 12813800 ~ 13030680 (+) | False | opcml |
| XM_026942030.2 | mRNA | downstream | 23785 | 13529335 ~ 13539892 (+) | True | vps11 |
| XM_026941925.2 | mRNA | downstream | 35012 | 13540562 ~ 13547225 (+) | True | ift46 |
| XM_026941997.2 | mRNA | downstream | 41787 | 13547337 ~ 13550191 (+) | True | LOC113543629 |
| XM_026941670.2 | mRNA | downstream | 276797 | 13782347 ~ 13784904 (+) | False | tmem126a |
| XM_026941671.2 | mRNA | downstream | 276808 | 13782358 ~ 13784904 (+) | True | tmem126a |
| XR_004579830.1 | other | upstream | 188441 | 13315938 ~ 13316216 (+) | True | LOC113543571 |
| TU316249 | other | upstream | 2933952 | 10569028 ~ 10570705 (+) | True | G266868 |
| XR_004579824.1 | other | upstream | 3750067 | 9704360 ~ 9754590 (+) | False | dclk1a |
| XR_003404427.2 | other | upstream | 4079802 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579771.1 | other | downstream | 1256763 | 14762313 ~ 14771073 (+) | False | vps36 |
| trnam-cau_35 | other | downstream | 3119359 | 16624909 ~ 16624980 (+) | True | trnam-cau_35 |
| trnar-ccu_8 | other | downstream | 3119850 | 16625400 ~ 16625472 (+) | True | trnar-ccu_8 |
| trnam-cau_36 | other | downstream | 3119932 | 16625482 ~ 16625553 (+) | True | trnam-cau_36 |
| trnar-ccu_9 | other | downstream | 3120423 | 16625973 ~ 16626045 (+) | True | trnar-ccu_9 |
