RNA id: XM_034312645.1


Basic Information

Item Value
RNA id XM_034312645.1
length 4180
RNA type mRNA
GC content 0.42
exon number 11
gene id nrg1
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15993508 ~ 16075236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGTTCCGTGTGGATGGGGTACCGGACCCGGGTGCAGAGCTTCATCAGAGTAGGATAAGAGTGCACCGGGTGTGGGAGATCAAGACGGGAGGGCTCAGGAAGGACGCCGTGGTGTTTCTTATCTGGTCCCGGGAGGATAAGTGCTTTCGGGTGAAAGCAGGGACGCGGTATGTGTTCTTCACGCAACCCACCGGAGACGCGTCGGTGTTGCGCGCGCACTCTCCGCCTGTGCAGAGCAAGCGCGCGGTGAGAAAGGATATAACTCACGTGCTGTGCCAAACATGCGccacacccaAGTTAAAGAAGCTGACTAACGTGAAAGTGGAGGAAGGTCAGAAGGTGACATTGAAGTGCGAGCTCTTAGCCGGCGGCAAACAGACCAAGATCGAGTGGTATCAAAACGGCATCAAGATTGGCAAAAATGAGACCAGAAAAATCAAGCTGAAGAAAAGAGGGGCATtatcagagctgcagttaatgAAAGTTACAGACTCTGATGTTGGAACATACACATGCAAGGCTGTGAATGATCGTGGAGAAGATACCCAGATTGCCAGTGTGCAGGTCATGAAAGCTCCCACCAGCACCACGGCGTCAGCCAAGACGTCTAGTCATATGACGCGTTgcaaagaagaggagaagagctACTGCGTGAATGGGGGCGAGTGCTTAACTGTGAATGTCACACCCAACAGCACCAAACACCTCTGCAGGTGCCTTCCAGGATTCACAGGGATCCGCTGTGAAATCAAAGAACCTGTCAGAGTCTCAAACCAAGAACAACATCATGGGATTGAATTTATGGAAGCTGAGGAGCTGTATCAGAAACGCATATTAACAATAACAGGCATCTGCATTGCTCTCCTAGTTGTTGGCATCATGTGTGTGGTGGCCTACTGCAAGACAAAGAAACAGAGGCAAAAGCTGCATGATCGCTTGAGGCAGAGTTTACGAAAGCGTAATGCCATGGCTGACATAGGCAACGGCCCACAGTACCCCCAAAACTTCCAGCAACCACCACAAAGCCTGCAGCTTGTTAATTATGCATCGAAAAACACTGTCCCTGCTCAGCATGTGATCGAGAAGGAAACAGAAACTTCATTTACCTTGAGCCAGTACACATCGCCAACTCAGCCTTCCACCGCCATCACTGCTAACCTCAGCCAGTGTTGGAGTAATAAAAAGCCAGAGAATGTGGTGTCTGACAGTCGCGTGATCTCTGGGGTACAAAACAGCCGGAATGGCACTCCAAGTCACCGCGGGCGTCTAAATGCCACCGGAGGAGTCCGAGATGTCAACGCCTGTGTGAAAACCTCCAGAGAAACAACAGATTCCTATAAAGACTCTCCATATAGTGAGAGGTATGTTTCGACTGTGACAACACCGACACGCCTCTCGCCTGTGAAGTCGCTTTCCCCAGCAACgccctcctctcctccctctgaAGTGTCAGCACCTCTCCCCAGCCTGGCAACCTCTATTCCATCCATGGCAATGAGTCCATCGGGTGAGGAGGAACGCCCTTTGCTGTTCCTCACGCCCCCGCGGCTCAGAGAGAAATCAGAGCCCAGCCGAGCCCAGCAGCTCCGCAACTCAGCCCACTACAACCATGGCTTGGACGAGATGAGCCCTCCACCCAGCCCACTGCACATCCAAGAGGACGAGCAGCATGAGAGCATGCAGGAGGACAGCTCCGTACCCTGTGCCCCACCCACATCCGCCCCTCACAGCCCCACGGCCATGCACAACTCTAAAAGAACAAAAGCCGGATCTCAGAACAGTCAGGATGAGCAGAGTGGAAGCAGCTCTGAAAGCAGCAGCTCAGAGAGTGAGGCAGAGGAAGAGCGCATGGCTGAGGACACACCGTTCCTCATACAGAACGCTGGGGTCGCAAGCATGGCTATGCTGGGGCTGGAGCTGGTAGACAGCAGCAGGACTAACGCCGCACTGCGCCTCTCCCCACAAGACGATCTACAGAGCAGACTAGCCAGCGTAATGGCTAACCAAGATCCAATTGCTGTGTAAAAGTGAACAtaccatagaaaaaaaaataagtaaaaggATACTTGTAAGATACTAAGagtaaacactaaacatttattttctataaattaAGTATTtgagggaaataaaaaaataacttttattttagttatgtAGTGCAAAAAAgtcttttataaattaaatgtgtatataatgtgtttgcttcttgaaaaaaaaaaagtgccattcgttatatatatgtatgtatatatggtCTCAGTATTTCAAAGGCAGAAACAATATCAATGGTGCCTTTAATTTCAGAATGGAGAACTAAAGGAAACTCCATTATGACACTGAGCTATATATTCATGACCTTGAGCCAGCATCCAGCTCTGCTACAATTCACAATCGGCATATGAAGTTTCAAAATCCataccaattaaaaaaaaaaaaaaaaaaaaaagcagttaaaaCTGAATCTCAAAGTATAAAACTGAAGtaatattagttattattagttTGTACTTTCTCAGCTGGTAACAAGGTTATTAAAGCTCAGCACTAGAAATCAAATTTAGTAATTGGGTAAGTGAAAGCTATGAATCAAGCCAGTTGAATTTGTCTAGTTTGCCTGTTACTGAATGAATATATGGCTCACTATGTCAATAATTCAACACATCCGTTGGCTTCACAGTAATGCATTGTGGGGAAGGTACAGCACCAATATAAGAACTGGTCTACACATTGTAAAGTAAACGCCAGAAAATGTAAGCATTCGCCCATCAATATTCTTGTACAATGTTATATTATTTCCAACGTGTCTGTTGTATTATTTCGTTTTACAGATGTGATCACTTGTGTAACAGGTTCACTCGCTTAAATGTAATTTGCAGCCTAAAAAATGAtgccagacaaaaaaaaaaagaaaacacacacatctgagtgGCAAACGCAGACACAAACTTATAATGAAGCTGAATGGTGGATAAAATGCCTCTGAATACTACTTCACTTTATAAATCTCTGTATTGTACCTGTTTAGTGTGTCAGGAGCCAGAAAGTCTTAAACAATATTCGTCCAGTTCAAATCAtaacttcatttttttcattttaacaaaaacacCCTAAAACAAGTCTTGCTttatctagatttttttttttttttttttttgggaactgGAGAAAAGTTTGAGTGTTTTAATAATTTCTGCAGAATACCATACCAAtaccatttttttgtttgtttgtttttcttcctgaGATAATCAAAAAAGCCATCACAAAATCTGGCCCATAACATTCTGcattttatagtatttattttgtctcttatttatttatttatttatttattactttggCCTTCTATAGTCAGTCAGATATAGTCTATATTTTAATAGTGTtgaaaatatacatttgaatatatatatatataaaatcagtatATATAAGACTGGTTTCACTTTTTCACCATTCCATTATATTcccacgtgatttttttttaatgttggaGGCCTAGTGTAAAATGCAATATGAATAAATTTACAGCTGATTATATTATCAGTGTACGATTATATCATCTAAAACATTAAGCCACAGAGAGCCGCTTGAAAATACCCCATGATGCATTGCTTTCAAACCAAGGAGTGTCTGTCAGATACGCCTGTCTGTGTAAATAAGCCTCCAACAGCTTGGGTTCTTTAATTTATGTAAGACAATTACAGCAAGTTTGTGTTCTTGGCCCACTTCCTTAACAATTTGTATCCATCTCACCACTGATACTTTTCTGACATAACATTAGCTAATTATTCATGaaatctttattgttttttgcaAAGAACAGACTGtatgttcattttttctttttcatataaaTGACATGTAAAATGATATGTTAATTCTTACTGGGTCTCTGTGTCAGTGGGGTCCATTATGACTACACTGTTGCATCTACAACTACATTACAAATGCAagagaaacacaaaataaaccatAGTcaagataactgcatgaacacacaaaaagacaatTGCAGGCATGTATTGCACTAAATGTGCATGATCACAGATGTCAATCAAATCCATTGCAGTAGTCACAGACTTGCAGGTCTCTCTACTCTTCTACGTTTCATTAAAGAACTCTCCATGTTCATGTACTATTGTGTGAAATACTAAACATACTGTGTGGTTTGAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0036135 Schwann cell migration biological_process
GO:0031101 fin regeneration biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0021755 eurydendroid cell differentiation biological_process
GO:0021778 oligodendrocyte cell fate specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320120 lncRNA upstream 4653 15988653 ~ 15988855 (+) True G270229
TU319876 lncRNA upstream 4998 15988285 ~ 15988510 (+) True G270012
TU319867 lncRNA upstream 38632 15954628 ~ 15954876 (+) True G270003
TU319866 lncRNA upstream 47652 15944636 ~ 15945856 (+) True G270002
TU319862 lncRNA upstream 51849 15941459 ~ 15941659 (+) True G269998
TU320194 lncRNA downstream 35135 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA downstream 60073 16135309 ~ 16136866 (+) True LOC117599367
TU320253 lncRNA downstream 156929 16232165 ~ 16264813 (+) True G270341
TU320370 lncRNA downstream 218636 16293872 ~ 16294107 (+) True G270437
XR_004579797.1 lncRNA downstream 252383 16327619 ~ 16364742 (+) True LOC117599337
XM_026941830.2 mRNA upstream 5728 15958558 ~ 15987780 (+) True wrn
XM_026941627.2 mRNA upstream 73948 15914224 ~ 15919560 (+) True ubxn8
XM_034312563.1 mRNA upstream 239617 15550925 ~ 15753891 (+) False LOC113543513
XM_034312471.1 mRNA downstream 171715 16246951 ~ 16257688 (+) True sh2d4a
XM_026941724.2 mRNA downstream 171715 16246951 ~ 16257688 (+) False sh2d4a
XM_026941727.2 mRNA downstream 171719 16246955 ~ 16257688 (+) False sh2d4a
XM_034312472.1 mRNA downstream 172607 16247843 ~ 16257688 (+) False sh2d4a
XM_026941726.2 mRNA downstream 172812 16248048 ~ 16257688 (+) False sh2d4a
XR_004579771.1 other upstream 1222435 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2677292 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5422803 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6238918 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6568653 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 549673 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 550164 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 550246 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 550737 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 550819 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile