RNA id: XM_026941839.2


Basic Information

Item Value
RNA id XM_026941839.2
length 5035
RNA type mRNA
GC content 0.45
exon number 12
gene id trim3b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10520018 ~ 10554251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGGTGGCTGGAGAAAGCCTGTGTACACTCAGGCGTGGGgtggagagactgagaaagggagggagagagacacgGAATGAAGGAGAGAAGCAGAGGGAGGGTAAAGAGTTTAGAGTTGAGCTTAGGGGGCGTAGGCAGGGACAGTGACACAGGATCTCattttgttgttctgttacTGAGCCCAGCTGGAACCCAGGAAACAGGAATGAAGCCTGCCTGAGATTTCTCCAACTCttctgtgttaAGGTGTATCCTGGCCCCCAGCCGTGTCTGTGAATGTCTGTCACCATGGCTAAGCGTGAGACTGGCAGCACAAGTCCAGTGGTGCGGCAAATAGACAAGCAGTTCCTGGTCTGTAGCATCTGCCTTGATCACTTCCACAACCCCAAAGTGCTGCCCTGCTTACACACCTTCTGCGAACGGTGCTTACAGAACTACATCCCACCCCAGTCACTGACCCTGTCGTGTCCGGTGTGCCGACAGACCTCCATCCTGCCTGAGAAAGGAGTAGCAGCGCTGCAGAATAACTTCTTTATCACCAATCTGATGGAGGTGCTGCAGAGGGATCCGGAATGTTCCCGTCCTGAGGCCTGCAACATGTTGGAGTCTGTGAGCGCAGCAGCTGCTGGAAAGCCTCTTTCCTGCCCAAATCACGAGGGCAAGGTGATGGAGTTTTACTGTGAGTCATGCGAAACTGCCATGTGTTTAGACTGCACAGAGGgggaacacagagaacatgtcACTGTTCCGCTGAGGGACGTTCTGGAACAGCACAAAGCAGCACTGAAGAATCAGCTGGATGCCATTCGCAACAGGTTGCCTCAGCTCACAGTTGCAATTGAACTGGTGAATGAGATCTCCAGGCAGCTGATGGAGCGAAAGACTGAAGCAGTGCATGAGATCAGCTGTACATTTGAGGAGCTAGAGCGGGTTCTTCACCAACGTAAGACTGCCCTCATCACCGACCTAGAGAACATCTGGAGCTCCAAGCAGAAGGTGCTGCAGTCCCAGCTGTTGTCCCTGCAGCAGGCAAAAGAACATATCGAGAGCagctgcagctttacagaacaggCGCTGAGCCATGGGGGTGCTGCCGAGGTGCTGCTGGTGCAGAAGCAGATGGGGGAGCGTGCAGGTGCTCTGGCGTGTCACACCTTCCCTGAACGGCCGCATGAGAACGGACACCTACAATGCCGCCTTGAGACAGAGGGCCTGCGGCGCTCCATCCAGAACCTGGGCGTCCTGATCACCACTAGTGCTGTGGGACACACTAGCGTGGCCACCGGAGAGGGCCTGAGGCACGCCGTCATCGGCCAGCACAGCACCATCACCGTCACCACCAAGGACAAGGACGGAGAACTGGTGCGAAGTGGAAATGCACTTCTGAAAGCGGAGATCACAGGGCCAGAAGGAAGCAAAGCAGTCGAGGTGGAGGTAGTGGACAATAAAAACGGCACATATGAAGTGGGCTACACGCTGAGGAGCGAGGGAGAGTATTCCTTCTCACTGATGCTCTATGGCCAACCTGTGAGAGGGAGTCCGTTCAGACTGCGTGCCGTGAAGCCCAGTGACGTGCCTCAGTCTCCTGAAGACGTGAAGAGGAGAGTGAAGTCACCCAGCGGAAGTGGAGGACACATCAGGCAGAAAGCAGTGCGAAGACCCTCCAGCATGTACAGCACTACTAAGAAGAAGGAGAATCCTATTGAGGATGAGCTTATCTACAGAGTAGgCACAAGAGGCAGAGAGAAGGGTGAGTTCACTAACCTTCAAGGCATCTCCACCTGCAGTGGCAGAGTTGTAGTGGCAGACAGCAACAACCAGTGTATACAGGTGTTTACTAATGATGGACAGTTTAAGCTGAGGTTCGGAGTGAGAGGCCGCTCACCAGGGCAGCTGCAGCGACCCACAGGAGTGACAGTAGACATGAATGGAGACATCATAGTAGCTGATTATGATAATCGATGGATAAGCATCTTCTCCTCAGAAGGGAAGTTTAAGAATAAAATCGGCGCTGGGAGGCTGATGGGGCCGAAGGGCATTGCAGTGGATCGTAACGGACACATCATCGCTGTAGATAACAAGGCATGCTGTGTCTTCATCTTCCAGTCCAACGGGAAACTGGTCACCAGGTTTGGGGCAAGGGGCTCGTTGGACAGACAGTTTGCAGGTCCACACTTTGTGGCTGTCAACAACAAGAATGAAATCATAGTAACAGACTTTCATAACCACTCGGTTAAGGTGTTCAGTGCAGATGGCGAGTTCCTCTTTAAATTTGGCTCACACGGTGAAGGAAATGGGCAGTTTAATGCCCCGACAGGAGTGGCTGTTGATGCAAATGGGAACATCATTGTAGCCGACTGGGGTAACAGCAGGATACAGgTGTTTGACAGCTCAGGCTCCTTCCTGTCCTACATCAACACGAGCGCAGACCCGCTGTATGGGCCGCAGGGTTTGGCGCTCACGTCTGAAGGTCACGTGGTTGTTGCTGACTCGGGGAACCACTGCTTTAAAGTGTATCGCTACCTGCAGTAGTGCTGTTTTGCACGTTCAGCTAAGATCAAGCCCCTTAACCAAACTATAGAGGATGAGCGGAAAGCACGAGAGCATTTTTCTTTCACAGTGCAGTTCTccaaaaaatccttttttttttttttttaaatttataatggTGATCTAGACCTTATGATTGTTTAGAGTGGATGTGGGAGGGTGATATAATAAGCACACATTGTACAATAATTCACCTCTAGGTTGATAAGAAATTGGTAAAATTGAGAATAACTTGTGTACAGCACTTTCTCTGAAGCATGCATTCATAAGCTAGTGTTATAATTTCTGCAGTTTGGTAACTACAGacttgttttttaatctttaaaatggcTCATAAAAATACAAGTTCTATAATTAATTCCATGAtaacatgtaaacatttaccTTAAGATAAACAACCTAATTACAGAGCATAAGCAAATGCACAGTCCTGCAGCTTAATTTAGAAAATTTTGCAATTCAAATTcattaattgcattttttttcagggATTTTCAAAATTCAGCAGTTAAGACACTTGTAATAAATGAGGACAAATGCGTTACATGTCATTAAGGAATTAATTATACTGGTGCATTATGAGTTATATAATTACTAACACTGTTACCAAATGACAAAGAATTATCTGTTGTTATTATACACTTGCATTTTTAACCTTCCTGAGGATTCACTAGTTTCTTAGATCAGAAATGAAATTAGAACTAAAACCTCTGACAGCTTTACTTCCCAtctctctcaaaacacacacatcccgTTTGTCTTTTGAGTGCAAACACCAGTTGTGGATTTTTAtgcctgtgtgtttgtatctATGCGCATATACAAGTGTCTGTaaatatgcatatgtgtgtatatatgagaaTATATATGTAATCTGGAAATGTACCACACTTTGGCTTCTCATCATCCCCTGATTAATGTCACTGATCTGGTGTTGTGCTTCAGATGTACAGACGTAATGCTCAAAGGAAATGAGTGACTGCTGTGTTTACAGCAAGATGCAGCTGCCAAAAGgacctgatttatttttctatttcatttcatcatgcTACTTTATTGTTTAGAGTAGTCctattgaaaaagaaaaaaaaaaacccttgttgGCTTTGGGGGAGGAGCAGCGTTCAGATAAATGTTGTGTTAATTGCAGTGTGTTTGCACATATTGAGTCCCATATACAGAATAtctttgtaaataataatttccaTTTATACAGCCGGTGCATCATTGTGCTTACTGTGGCAGTGGAAAGGTCGTCTTTTTATCAGTATTtaactggttttatttatttgatgttttgtaCAGACTTTGTTCTCTGTTTTGGGTGTTTTTGGAGGAGCTCCGCATAATTCTCACCAGCCAAAGCTTTcaataatgtcttttttttttttgtacatttttctgttCGCTTTTGAGAGCCTCATCCATTTGTCTTGAGGTATCAGGTGCTGTTTAGGCCATAAAGGAAACTCATTATTTTTTACCACTTACAGTCATCAGTCAtatcgagtgtgtgtgagtttaaggTAGTGTCGTGTGagagcattgtgtgtgtagctgttgcTTAATGACTCAGTTTATCTGTTTCTGGACTGGAGTTACATGCCGGGAAAGTTGTGCATGAAGAGGCTATTCCAGCAatgtggactttttttttcttttttaaatcagttttgttGCATCTAATATCTGTAAATGAATATGAGTATTTGTCAAACGTCAGACGTCTCAGAGCAGTGGTTCAGTAGTGGGGACGTGTCGCTCTGCACGTGTGTGTTTTCCGTGTTGATCAGGCTTCAAGCTCTTCGATTCCTTCAGGCAGGTCCCCACATCTGTGTGCATCCCAAACACTCATGTGTGACGACTTACTCAATTCCTTAGATTCATAAGTTTTTACAAATCTTGCAAGAACATGTTTGGGACTTTAAGACACATGATACTTGGCTCAGTTTGACCCAGCACACAGACGGATGCTAAACATGTTGCTGATACTGTAGCtaatttttacactttattttattaactaatTGCACATGTGTAAATCAGCTCACAATTATTTCTCACTGCTAAAGCTGATGTATGCCtgcaatgcattatgggaatgGCTTCTGTGCATTGTAGCATTCTTAAAATAGTTGATAGTTTAGTTTAGAAGTTTTAGCATTTGGGACAAAGCAATTAGATTTTGAGCAACAGGACTGATCCATAGTCAGTTTCTGTCTTCCATTATTGTGTTAGcaaaaagagagcaaaagagcTGAACCTCATCTCTGAGAcgcccaacacacacacacccacacacacacagcactcacTGATAATCATCACTAACTCCTTCCAGAACATAAACTAGAACCCATCATTAATTACAActcattcagtaataaaaagtCTTGTACAGCACATGAACCTTTCAATGTCTTCACTGATCAAGTCTAAcagtgtgtaattaaaaattgtaaatataaagttatttaaaCACT

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315885 lncRNA upstream 531196 10003146 ~ 10003361 (+) True G266580
TU315784 lncRNA upstream 588978 9944113 ~ 9945579 (+) True G266499
TU315779 lncRNA upstream 594257 9937395 ~ 9940300 (+) True G266497
TU316250 lncRNA downstream 17640 10571891 ~ 10572147 (+) True G266869
TU316252 lncRNA downstream 26608 10580859 ~ 10581182 (+) True G266871
TU316276 lncRNA downstream 112567 10666818 ~ 10668314 (+) True G266892
TU316286 lncRNA downstream 178286 10732537 ~ 10734630 (+) True G266901
TU316342 lncRNA downstream 265275 10819526 ~ 10819739 (+) True G266946
XM_026941715.2 mRNA upstream 15341 10507226 ~ 10519216 (+) True fhdc3
XM_026941792.2 mRNA upstream 29115 10485051 ~ 10505442 (+) False arfip2b
XM_026941585.2 mRNA downstream 184051 10738302 ~ 10759716 (+) True trpc4a
XM_026941913.2 mRNA downstream 222051 10776302 ~ 10811764 (+) False postna
XM_026941912.2 mRNA downstream 222052 10776303 ~ 10811764 (+) True postna
XM_026941952.2 mRNA downstream 311361 10865612 ~ 10882024 (+) True scaf4a
XM_026942063.2 mRNA downstream 330025 10884276 ~ 10890564 (+) True sod1
XR_004579824.1 other upstream 779967 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1109702 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1109702 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1198267 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 1864760 8668814 ~ 8669797 (+) True G265807
TU316249 other downstream 14777 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 2761687 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 4208062 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 6070658 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 6071149 16625400 ~ 16625472 (+) True trnar-ccu_8

Expression Profile