RNA id: XM_026941909.2


Basic Information

Item Value
RNA id XM_026941909.2
length 2294
RNA type mRNA
GC content 0.42
exon number 8
gene id tpm2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16511235 ~ 16534943 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTGTGTAACTTTTCTACAAAAGCGATTTTCTCCTTCGGCACAGCAAAGGCTCTTACATAGAGCTCTGAAACACAGTAAACGTCCTTTTTCATAACTCTCTCATGAAGAAGAaactttagtttagtttagtggTTTCAGGGTCCGGAGGTGGCCCAAggctacctctctctctctctctctctctctctctctctctctctctctctctctgtgcagtcCAAGGTGTCTGGGTTGTAGATTAGTGGCGAAAGCGAGcgactaacaaaaaaaaaacaaaaaaaaaaaacaaaaacagcccTTTGGTTAGTGTCGGATTGAATGGCCGGAATGTCCTCCATCGAGGCTGTGAAAAGGAAAATCCAGAGTCTGCAGCAGCAGGCGGACGACGCAGAGGACCGAGCCGAGGCGCTTCAGAGAGAGGTGGACTCAGAGAGACATGCCAGGGAGAGGGCAGAGGCTGAGGTGGCCTCCCTGAACAGACGTATCCAGCTGGTTGAGGAGGAGTTGGACAGGGCCCAGGAGAGACTGGCCACCGCACTGCAGAAACTCGAGGAGGCAGAAAAAGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTCATTGAGAACAGAGCAACGAAAGATGAGGAGAAGATGGAGCTTCAGGAGATGCAGCTGAAGGAGGCCAAACACATTGCTGAGGAGGCTGACCGCAAATATGAAGAGGTGGCCCGTAAGCTGGTCATCCTTGAGGGTGACCTTGAGCGTTCTGAAGAGCGTGCTGAGGTGGCTGAGGCCAAATCTGGTGACCTTGAGGAAGAGTTGAAAAATGTCACCAACAACTTGAAGTCTTTGGAGGCCCAGGCAGAGAAGTACTCAACAAAAGAAGACAAATATGAAGAGGAAATCAAAGTGCTCACTGAAAAGCTGAAAGAGGCTGAGACTCGTGCTGAGTTTGCAGAGAGGTCTGTGGCTAAACTTGAGAAGACCATTGATGATTTGGAAGAGAAACTAGCCCAGGCTAAAGAGGAGAACCTAGGCATGCACCAAGTGCTGGACCAGACTCTAATGGAGCTGAACAATTTATAAAGCGCAAAATCTGCGCCAAAAACAAGAGTCTTACATGGCATAGAGCTTCCCAGTGGAGCCCCATGCAGCAAACCTGTGCACACACATCCCTTAGAGGGGTAAGGTCTTAGTAGCTTTAGTTTGATAGATCCAGATGCCCTGAAATTACACTCTGCAATTTTATACCTATAGATAGACTCTCTGTGGTATATCTCTCTAAGACACAGGCCCATTTTATCAAGATTTTCTGAGTAGTTATAGTATCAGTAGTACATCCATCTGTACCAGTGAAATGACAGTGTCTGGCTTCGGAGTAGTTCTGACACATAAGACCAAAGTTATTATCTGTCTAATTACTAATAAGTGTTTGTTCTAACCAAGGAGCTGTTTACTCATTCATTAACAGTGAAGCTTTAACTACTCCACTGCCTTATCCCCTGTGCTTTAGTCATTCCAGTGCTTTACTCGACCAAAATATATCCAAatcaactgagggactcattgCATTTTATTATGGAACTTCAATTGATTTCTTAGTTTgctgtttatgtaacattaataTGGACTGATTTCATGTGTGTAAACAAAGCACAGAATTATGggtaatattgaatatttactgATTATCACCATCAAATTGACCACCTGCTCAGTTTAATTAGTGCTTCTATTGATGAATAATCCACCTGGAGATATTTATGACAGGTCATGAATCCATGTGCAGTTCACAGTTTCTCTACACTATTAGAGCTCACTAGAGAACTGTTTTTAGTACTTTTGGTCAACTTAagaaatttgttcattttatagtTACTAGTATGTGACAGGACCAGAACTCCTCTCAGAGTAGATGCAAGTGCCTGTTTACAGATGTGAAATCAGTCTACTCATATATTCACCAAAAATGGCCAAAGTCAATGCTGATTAAAATTACTATCAGTGTACTCTTCACCTAATTTTTGATTTCTGAATGTGGATCATTTTGAGAGTTCTACAAGTTTGTAATACTTCCTGTTTCATGCTGATTCCCCCTCAAATTTTACCATGATGTATTAAAACTGGTGCACATGCCACTGagttttttcactatttttaaaagcaggattttttttaaaaaagttgtgGCCTTTTAGAATAATTGATGGGAATGTGATTCTCTTGATCAGTTATAGCCCATTTTTAAAGCATCACCTAACTATGCAATTGTGTAAGCTCTTTGTTAAAGATGATTAAATTGTTGAATACAA

Function

GO:

id name namespace
GO:0005865 striated muscle thin filament cellular_component

KEGG:

id description
K10375 TPM4; tropomyosin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320489 lncRNA upstream 7487 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 132302 16385030 ~ 16385932 (+) True G270520
XR_004579797.1 lncRNA upstream 153492 16327619 ~ 16364742 (+) True LOC117599337
TU320506 lncRNA downstream 41420 16576363 ~ 16577240 (+) True G270536
TU320608 lncRNA downstream 91041 16625984 ~ 16626358 (+) True G270626
TU320717 lncRNA downstream 262902 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 526038 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 552452 17087395 ~ 17087922 (+) True G270856
XM_034312895.1 mRNA upstream 10598 16433574 ~ 16507636 (+) True tln1
XM_034312896.1 mRNA upstream 10598 16467800 ~ 16507636 (+) False tln1
XM_034312897.1 mRNA upstream 10598 16470943 ~ 16507636 (+) False tln1
XM_026942033.2 mRNA upstream 89011 16421565 ~ 16429223 (+) True hmgcs1
XM_026941568.2 mRNA downstream 3826 16538769 ~ 16552518 (+) True zgc:114200
XM_026941609.2 mRNA downstream 48093 16583036 ~ 16589994 (+) True reep5
XM_026942067.2 mRNA downstream 56950 16591893 ~ 16594397 (+) True LOC113543669
XM_026941747.2 mRNA downstream 135374 16670317 ~ 16744667 (+) False pam
XM_026941750.2 mRNA downstream 135374 16670317 ~ 16744667 (+) False pam
XR_004579771.1 other upstream 1747161 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3202018 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5947529 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6763644 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 7093379 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 89966 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 90457 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 90539 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 91030 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 91112 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile