RNA id: XM_026941922.2


Basic Information

Item Value
RNA id XM_026941922.2
length 3169
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC113543581
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16299094 ~ 16310306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGGTTCCTGCCGAGGATTTATAAATCCATCCGTCACCGGGACTCTAATCAGGATGAACCGGTTTCTGAAGATTGATAGTTGGATGAATGTTGGATCCTTTTGAGTGTTTGTTCAGAATaactttatttgttttagttACTACTCCTTAGCCACATGCCAAACAGCTATTCTAGTAAAAACATCTAAGTAGATTTTACTCCACCTACTGTGGCGTATTATTTCGTGTTAGTGTGCTGTGCTGTTTGGAATGTAACCGACGTTATTGCATTTCCTCTTTATGATGAGCTACAGACTGTGCGATGATCACGATGACAACAGGATTGCTTCTGAACAGAACAGCGATGGCCACTGGCTCTGAGTAATAGGCGCtgaatggCTTCAGAAAGGTGATCTGCTAAAGATCCGGGACAACACCAAAACCAAAGCGTTTGCACTTTTAGAAATTCGGATTAGTAATCATGCGGATTGCTTTGTTTCTTATGACAGCAGTTGTTCAGGTAGTGTGTAGAGATCAGGAAGTCTGTGAAATTTTTCCGAGGAACCCAGTCGTCCCATATGGTTCCAATTTAACAATGTTCCTCAGCACTCCATCCAGTAGTGCCTGCCGCTCAAAGACGTCGTTCAATCCCAGCAGAATCTTCTGGACTCTCAATAAGAGGAAAATAGATGAGAGGTTTTATGACTTCAACTCCACCTTCGCCTCTGTGTCCATTCGCAATCTCTCTGTAGAAAAAGGCACAGTGGAGTGTTTTTTAAACGTTACTACCCCTGTCCTATTGCATGGCACCTTCATCCAGACATACCCTCTTGTCAGCAGTCCCCAAAATGTCTCATGTATTGGAAAGATGAAGTCTGATCCTGATCCACCTTGGCCCAGAATAATCTGTATGTGGGATCATGAGCAATACAATACAGATATAAAGTACACAGTCCATCTGAAtatgtgggatttctgcaggcagaaagaaGAATATAGTTGTGAATCACGGGAGAAAAATTGTGCATTCCCGGATGATGTGACTGTACTGTTAACTAGTAGACTGAGCATAAGTGTGAGTGCACAGAATTCCTATGGACATTCAGCTCGCTCCAATGAAGTTACCTACAATGAGGGTTGGGCTATTGTTCAAATGGATTCACCAGGAGATGTTATCGCTGAGCCTTTGCCCACCGGTCTCAGAGTGTCGTGGAAGTTTGAACAGCAATCATGGATTGACGTGGAGGATACGGAGTGTGAAATACGATTACATGAAAACGGTTCATATACTGAGCCTGTGGTGAAAAGCGTGAAAATCGGCTTAAGCAGTGTGGAAGTGACTGAGGTGAAACCATGTACCAACTATACAGTGTCGGTGCGCAGTAGGTTTCTCGGCtcagtctggagcccatggagcCACGCTGTTACAGCACTCAGTTATCTCAATGTCAGTAGCTTACAGTTCCATCTCTGGAGATCCAAAAGTGTGTTGGGTAACAGGGGGAGAAGAACAGTGCACCTTATGTGGAAGgGAGTCCCACCATCATGTAAAGCTTTTGATGAATATTGTGTCTTCTGTGACTCTCTGAGGCTTCCCGAATGCTTTGGGCCCTACCAAAGTCATACGTTTGTTACTTTAGATGAACATCCACACAGAATAACTGTGGCTGTGTTTCGCAATGAAACGAGTCTCAATGAAGCTTCTATTGAGGTACCTGCCATGGCAGAAGAGGTAAATTTACCTCCGGTTAGGAATATTAGTGTGTTTGTCCAACATGGATATATCCATATCACCTGGGAGAAGCCCAGTCTTCCTGTCAGTGGATATATAATAGTCTGGAACAGTACTGCCGAAAACCACATGTGGGAGCACACCCTGGAAACCAGTTTCATTCTGAAGGGTGATCCTATCACCCTCTACACCATGTCACTGACCCCACTCTATAAAGATGGTCCTGGAAATGAAACTACTCTTCATAATTGCAGCCAAGAAGGAACCCTAACAGAGGTGTCTGGGGTCCAAGTGACTGGGGTTAGTGACACACACGCGGAGATCCAATGGTTGCCGGTATTACCAACTCAGTGCTGTGCGTTTGTACTGAACTACACAGTGTTCTACAAAACATACAATCAGCCAAAAACCAGAAATGTCACTGTGGGACCGAGTCAGCACCATGTCATTTTGGAGGACCTGCAGGCCAGAACAGCGTACAGCGTTTATGTCATGGCCAGTACAGTGGCTGCTTCTTCCAAGAGTGTGCCAATCATATTCTCAACGAAGCTCAATAATAAAGTTTTCCTTATTGTGATTGCCTGCTGTGTTGGCCTGATCCTGCTGCCCATGCTTGCTGTGACGATACAAAGGAAATTCTTGAGTAAAAAGATTCCAGACCCACGATTCAGTTCTCTGTCCATGTGGCCATCAGACAATTGTAGAAAGCCATGGCGCCTACTCCCAGTGCCTGGAGGCAGGGACACAGAGAAAATTCTGCCATGTCATGTGGACAATGAGGTCATCAGTGTTGCCCCAACAAGCAAAAACGATATGGCTATAGTGAAGGCTTTGACAGATATCCAGAATATAGCAACACATAAAACAACATCACAGACAGAAGCCACCCCACTGGCTGCCAGTTTTTCTGAAAAAGGACAGCTGCCATTTGGAGGGAAAGAGCAAAGAGTTCCTCCTGTACCATCACTGGATCTCCAGACTTCAGAAATTTGTTCTCTCCCCCCTAGTCATTCACCGTACAGGAAGCAAACCCCAATAAGCAGCCCTGTGGAGTCGCCTACTAAACCTCAATGGTCAGATGAGACAGAGGCACTGCTGACACCAAAGCTCAAAAATGCAACTTACTTTACGAGTTACGTAACGTTGGACATGTTTGAACCTGGGAAACACCCAACCAAGTGACGTCTTTGACACAgtggtcagtttttttttaacctcatgttattattgtgtgtcaTTACTAcagctgtgatgtgtgtgtatctagAGCATTCAGAGCATCCAGTAACCAGTAATACCCAGAATTACGTTCTTTTCACACACAGGATGAATTATTTGCCAAGTAGAAGGTGTTTTTGGATCAACAAAGAAGTTAAATTAGAATAAATTAAGAAAGCATTCATCATATTGGTACTACCTTCATTTTTCACTTccttagttaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320370 lncRNA upstream 4987 16293872 ~ 16294107 (+) True G270437
TU320253 lncRNA upstream 34281 16232165 ~ 16264813 (+) True G270341
TU320194 lncRNA upstream 160785 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA upstream 162228 16135309 ~ 16136866 (+) True LOC117599367
TU320136 lncRNA upstream 304039 15994853 ~ 15995055 (+) True G270236
XR_004579797.1 lncRNA downstream 17313 16327619 ~ 16364742 (+) True LOC117599337
TU320399 lncRNA downstream 18205 16328511 ~ 16328772 (+) True G270449
TU320453 lncRNA downstream 40942 16351248 ~ 16351459 (+) True G270495
TU320479 lncRNA downstream 74724 16385030 ~ 16385932 (+) True G270520
TU320489 lncRNA downstream 200237 16510543 ~ 16510747 (+) True G270525
XM_026941979.2 mRNA upstream 6921 16279081 ~ 16292173 (+) False ddx4
XM_026941879.2 mRNA downstream 68087 16378393 ~ 16417773 (+) True map3k1
XM_026941880.2 mRNA downstream 79549 16389855 ~ 16417773 (+) False map3k1
XM_026942031.2 mRNA downstream 109734 16420040 ~ 16429223 (+) False hmgcs1
XM_026942033.2 mRNA downstream 111259 16421565 ~ 16429223 (+) True hmgcs1
XM_026942032.2 mRNA downstream 111259 16421565 ~ 16429223 (+) False hmgcs1
XR_004579771.1 other upstream 1528021 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2982878 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5728389 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6544504 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6874239 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 314603 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 315094 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 315176 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 315667 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 315749 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile