RNA id: XM_026941925.2


Basic Information

Item Value
RNA id XM_026941925.2
length 1523
RNA type mRNA
GC content 0.45
exon number 12
gene id ift46
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13540562 ~ 13547225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaagagtcgAAATTCCCATCCCCACCATCTACACTGCACTGTGCCAGGTCTCGCAGAAAACATCGCGAGATTGGTGTCCCTTGGTAACCGTACACCATACAGCTTACATGGAGAGGTCTGAGGGACAAAAGACTCAGCTCATCGCCAACCAGCCATACGACGAGACTCTGGACATCAACGACTCAGAAGAGGTGGCCAGTCTGTACACACCTACTCCACGGCAAGCAGTCTTTAGGAACACACACCGACAGCAGCTGAATAACATGGCCAATAGTGGCAGTGATGAGTTTGAAGATGGTACCAAGcaaaaaaagaaaggtcCACCTGCTAATCCACGTgaagcaaatgaaaataatgatgaagaggaggaggatgatgatgacgacgacgatgatgatgattctGATGAAACAGAGTCGGATGAAGATGATGGGGAGCCAGGTTCAGCTCCGGAAGGAGCATATGACCCAGCAGATTATGATCATCTTCGTGTTACATCAGATATCAAAGAACTTTTCCAGTACATCACACGATACACACCACAGACCATTGAATTGGACCATAAGCTGAAGCCTTTTATTCCTGACTTCATTCCAGCCGTAGGCGACATTGATGCTTTCCTTAAAGTTCCTCGGCCGGATGGGAAGGCGGACGGTCTGGGCTTGCTGGTGTTGGATGAACCATGTGCTAAGCAATCTGACCCCACTGTGCTCTCCCTCTGGCTTTCTGAGAACAGTAAACAACACAATGTCgctGAAGTGAAAGTAAAGAGTATTGAGAACACACAGAAGAACTCAAAAGCTATAGATAACTGGATAGAGAGCATCAGTGAACTACATCGCTCCAAACCACCggctacagtacactacaccagACCCATGCCAGACATCGATATGCTGATGCAGGAGTGGCCACCAGAGTTTGAGGAGCTTTTGGGCAAGgTGAACCTCCCCACAGCAGATATTAACTGTGACCTGGCAGAGTACATTGATATAATTTGTGGTATCTTGGACATTCCAGTGTACAAGAACCGAATCCAGTCTCTCCATGTCCTGTTCACACTCTATTCTGAATTCAAAAACTCCCAGCACTTTAAGAATTTGGCAGAGGGCCGCAAGTCCAACACGTCATCCACTCAACATATTGCTACTGCTGAAGCAGAGACATTCATGCTAGAGtgatctttctctctgtctctcagccaCTCTagctcttttgctctctctttctctgtatctctccctgtttctcactccctccttctctctctctctctctcacacacacacacgaatgtGAACCCGCAGAGACCCTATGAAAGAGCCGTTAAGTCGCTTATGCCACTCCACCCCCACTCCTCCCATTACAAGTGGCAGCAACTTTATTTTAACTTCTCAGCcgtctgtaatttttttttgttaagaaaatgtctgtatatattaaatttttacCAAATGCATGTATATCTATAACTATTTCTTTATGTTgtgatatttacaaataaagactttttttccctcaga

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0048264 determination of ventral identity biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19682 IFT46; intraflagellar transport protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318179 lncRNA upstream 14177 13521152 ~ 13526385 (+) True G268587
TU318169 lncRNA upstream 65064 13432734 ~ 13475498 (+) False G268580
XR_004579829.1 lncRNA downstream 312571 13859796 ~ 13863635 (+) True LOC117599363
XR_004579837.1 lncRNA downstream 395460 13942685 ~ 13947023 (+) True LOC117599376
TU318956 lncRNA downstream 1008261 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 1049739 14596964 ~ 14597818 (+) True G269268
XR_004579796.1 lncRNA downstream 1051382 14598607 ~ 14604363 (+) True LOC117599336
XM_026942030.2 mRNA upstream 670 13529335 ~ 13539892 (+) True vps11
XM_026941802.2 mRNA upstream 35012 13504657 ~ 13505550 (+) True LOC113543522
XM_026941800.2 mRNA upstream 37175 13494721 ~ 13503387 (+) True zpr1
XM_026941950.2 mRNA upstream 47445 13491329 ~ 13493117 (+) True pwp1
XM_026942053.2 mRNA upstream 89769 13448733 ~ 13450793 (+) True bsx
XM_026941997.2 mRNA downstream 112 13547337 ~ 13550191 (+) True LOC113543629
XM_026941670.2 mRNA downstream 235122 13782347 ~ 13784904 (+) False tmem126a
XM_026941671.2 mRNA downstream 235133 13782358 ~ 13784904 (+) True tmem126a
XM_026941927.2 mRNA downstream 264481 13811706 ~ 13822838 (+) True arrb2a
XM_026941928.2 mRNA downstream 264481 13811706 ~ 13822838 (+) False arrb2a
XR_004579830.1 other upstream 224346 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 2969857 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 3785972 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4115707 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 1215088 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 3077684 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 3078175 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 3078257 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 3078748 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile