RNA id: XM_026941928.2


Basic Information

Item Value
RNA id XM_026941928.2
length 3554
RNA type mRNA
GC content 0.41
exon number 15
gene id arrb2a
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13811706 ~ 13822838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGGTCAGAGCGGTTGCTCATTGTAGCTGCTCTTCCCGCTGTAATGTAGCGCAACTGAAATAACCCTAACGTTCgatgtgttttattaaactaAATAACACTTAACCTTTATTGACTCGTCAAATTGTGGAGGTCACATTCTCCCTGGATTATGGGGGACAAGGCCGGCACCCGgGTGTTCAAGAAGTCCAGTCCGAATTGCAAGATTACAGTATACTTGGGGAAAAGGGATTTTGTGGATCATTTGGATCAGGTGGATCCTGTAGatgGAGTTATTCTGGTAGATCCTGAATATCTCaaagacagaaaagTATTTGTGACGTTAACCTGTGCCTTCCGTTATGGACGGGAGGACCTGGATGTTCTTGGACTTTCCTTCCGGAAAGATCTCTACATATCCACGTTTCAAGCTTTCCCACCTATAGCGGAGGAGCGCAAGCCCAACAGTCGTCTTCAGGAGAGACTCCTGAAGAAATTGGGGCAGCAGGCTCATCCTTTTCACTTTACTATCCCTCAAAACTTGCCATGTTCAGTTACCCTGCAGCCTGGTCCTGAGGACACTGGAAAGGCCTGTGGGGTAGATTATGAGATAAGAGCTTTCTGTGCCAGGTCTGTGGAGGAGAAGATTCATAAACGaaattcTGTCCGATTAGTGATTCGTAAAGTGCAGTATGCTCCTGAGAAGCCTGGTCCTCAGCCAATGGTGGAGACAACACGGAGCTTCCTGATGTCTGACCGCTCTCTGCATCTAGAAGCGTCTCTAGATAAAGAGCTGTATTATCACGGGGAGCCCATCAGTGTGAACGTTCATGTCACCAACAACTCGACCAAGACTGTCAAACGAGTCAAAATATCAGTGCGGCAGTATGCTGACATCTGTCTGTTCAGCACAGCTCAGTACAAATGTCCAGTGGCTCAGCTTGAGGCAGATGACCAGGTATCATCCAGCTCCACATTCTGTAAGGTGTACACTCTCACTCCCACCTTGAATAATAACCGAGAGAAGCGAGGCCTGGCTCTGGATGGCAAGCTCAAACACGAAGATACCAACCTGGCCTCCAGCACCATTGTTAAAGATGGATGTAATAAGGAGGTTCTTGGAGTTCTGGTGTCGTATCGAGTCAAAGTTAAGCTGGTCGTCTCCCGTGGAGGAGACGTCTCAGTCGAGCTGCCGTTTGTCTTAATGCATCCTAAACCCGTAGATGTTCCCACTTCTCGACCAGCCTCAGcTGTGCCAGAGGCAGACCCTCCTATCGACACCAACCTCATAGAGTTTGACACAAATAGCTTCACCCAAGATGATGACCTGGTGTTTGAAGATTTTGCCCGTCTGCGGTTAAAAGGAACCACTGATGATAAAGATGAGGACTGCTGAGCCTTCTTTCCtccttcttgttctttttttccccctactcAGCCCAGAAACTTACAGCATGAAGAAAAATCACCAACTAATTTACTCAAAAAGAACAATCTTTCATAACAAATCTCCTTCCTAATCATCTTATCATTCCTTTGATGAAGCAGTGTTTTGCCAACATTTTCCCAATGCTAAAAGGATCATTTGAGGAAAGGTGCTGTAACTTAGAGCATTgaacaaaggaaaaaaggagaatTAACTTCCTTTTCTTATGAGTAAATAATGACCTCATGTGATTCTTGTGCCAACTGTCGATGTAGGAAATCTAGATGCCGCATTAGCCACTGTCATTGACTACTTTGATATGTCAGTAACTGCACATAGATCAGTTCAAGTCTAGGGAGAGACGCAGGTAGTATGTTCATTCTCACTAAATCAGCTTGGTTACAGACTAATAAATTTCTGCATGTTGTGGGTAATGTAAATATACCTGCATTGCCGATAATTTGATTAAGCCTAACTGCTGAGAGACTTAGGCAAAGCAATGGGATGTCTGCTAATATGCATTTGGACAGAAATGATCATAAAACATAAGACCTACCAGTCTTGAGCATGCATTTTACTAGTATTAATGCGGTTAATCTACTACACAATTATGAGAATAAAAGCctagtagtaataataaaaataaaaatcagagtAGATAtctgaaatttgttttttttagttaataaaacattaatccAGGAACAAGATTACCTAAAAACATAAAGTATAAGCATCATGTAGACATGGCTTTACAAACAACATTTTAATCACAGGGTAGCACAGTGGCGCAGTGGATAGCgttgctacctcacagctccaggccCAATCCTGAGCTcttgttactgtctgtgcagagtttcttaTCTTCTGCCGTTGTCTGCATGggcttcctcccacctcccaaaaatatgggagggttgaatgtgtgtgcatggtgccctgtggtggactggtgtcctattcagggtgtgttcccaACTCTCacccagtgttctcaggataggctacagatccaccacaaccctgataGTATAAAACTGTTCCAGAAGATGAATTAACATTCATCGTAAATTGAACAAGTAACATGTAAGCTATGACATGGTAATAATAAACAGCCTGCGTAAGTAAATGGTACTTACTGAGAAATCCAACGACAAATCTTATTGCAAAACTTATCGTACTGTTCTACACATGCACTACCAGACATTAACATTAGGCAATAAGTTAGGCAGTTAGAGAAGCTCTCACCCATTAAAGTTATACGCAGTAAACCCACTTCGTCAGCAGCTGTAACCCTGCCGTAAAGTCCcccataaaatgaaaatgcacattttcaGAGATTTGTCAAAAGTGAATCTGCGTTCTCTTGCTTTGAGATGTCGGTGATTCTTGTATCTTGCTGCAAATTGTTCTGACTCCATAGAGTCAGTCTTGTCTGTTTTAGCCTAATGTGGCATCTAGGTGTCCTACATGGTGCCAACCTTTAGAGGTTAAATACAAGAAAtggatttggaaaaaaatccaaattgcGAGAACTTGTTTTGTTGTTCTATGAtatcctgaagttgattttgAAATGCCTTTTTAGCTTAATTTCTACAATGTGTTTTGACATTAGTAAATGAGTGTTAATAATCTTAATTATTATGAGTTACAACACAAACATGATGAAAAAATAACTGTATTGGGAATCCCAGGCGAAGCACTCCCACGCACAACCTCTTTGCCCTGCATCATGTTTTACAAAGAGCTCATTAGCTAACGGTTTAGCGGTTAAACTTGATTAATACTAATAGgatgtatgtttgtgttgtcCATAGTATACTGTGTCCAACCCTCAGGTACACTGGCTCATTCCTTCTTCATTCAGAGATGTGACAGAATCGGTGCTGATATGGAGTGCGCTTCAGTCGAGCTGTAATGGCCGTCTGCACATTGGAAGGGCGTTTACATTTACCCTACAGCACCTTCATGTGTAAATAAACATGCTACTTTTGGTGAAAAAATTCATCATGTCTCAGACggaaaaaataagtataatTATCTTCATGTTAATACGAGTTTAATAACTGTGACGTcattgttttccatttttttatttcagaatttatttaattttttaaataaaaatataaaatgccaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318179 lncRNA upstream 285321 13521152 ~ 13526385 (+) True G268587
TU318169 lncRNA upstream 336208 13432734 ~ 13475498 (+) False G268580
XR_004579829.1 lncRNA downstream 36958 13859796 ~ 13863635 (+) True LOC117599363
XR_004579837.1 lncRNA downstream 119847 13942685 ~ 13947023 (+) True LOC117599376
TU318956 lncRNA downstream 732648 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 774126 14596964 ~ 14597818 (+) True G269268
XR_004579796.1 lncRNA downstream 775769 14598607 ~ 14604363 (+) True LOC117599336
XM_026941670.2 mRNA upstream 26802 13782347 ~ 13784904 (+) False tmem126a
XM_026941671.2 mRNA upstream 26802 13782358 ~ 13784904 (+) True tmem126a
XM_026941997.2 mRNA upstream 261515 13547337 ~ 13550191 (+) True LOC113543629
XM_026941925.2 mRNA upstream 264481 13540562 ~ 13547225 (+) True ift46
XM_026942030.2 mRNA upstream 271814 13529335 ~ 13539892 (+) True vps11
XM_026941975.2 mRNA downstream 3954 13826792 ~ 13831196 (+) True med11
XM_026941974.2 mRNA downstream 10589 13833427 ~ 13838079 (+) True c17h17orf49
XM_026942071.2 mRNA downstream 61623 13884461 ~ 13889981 (+) True si:dkey-175g6.2
XM_026941712.2 mRNA downstream 76726 13899564 ~ 13904855 (+) True slc25a1a
XM_034312338.1 mRNA downstream 91170 13914008 ~ 13939043 (+) True ltn1
XR_004579830.1 other upstream 495490 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 3241001 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 4057116 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4386851 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 939475 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 2802071 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 2802562 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 2802644 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 2803135 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile