RNA id: XM_026941932.2


Basic Information

Item Value
RNA id XM_026941932.2
length 3735
RNA type mRNA
GC content 0.43
exon number 8
gene id uspl1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9365347 ~ 9400306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttttatttatatattttttaaattgtgttgtctgtgtgctttcttactatattacctccccaaccgAGTTTTTTAGATTGATTGTATTATTAGTCCATGATCTAGTGAAccaatatcatgatatatttattcatagagacttcaaagcacttctgtaagtcgttctggataagggcgtctgcccaATACCATAAATTGAAATgtaaatatgggtgtgatggttaggggTCCACATACTCTTAGCTgtagagtgtatattagagaTGAATGAAATTGAACGTAACCCAGTTGCACAAAGAAGTGCACATGAAAGTATTGTAGTTTGAATGCCtcaaaatgcagcaaaaaaaataaaaacagttctcctgttctactgttttgtttttttaggcaTGTCTAGTTTCATTTTTCCCTCTTCATGGATGCTAGAAGAATGATTTCTTTCCTCTTccaaattaaaatgtttgagaatCATGTTTCTTGTTCTAGGGTGTGAGCAGATAAGCCCAGGTTCATGCTGATGTTGAGTTCATGGCGAGGAGATCCAGCAAATAACAGTGAATGGAGTGAAGGGCCAATGAACGGTGAAGGCTGTGATCTAAGTGTGCCAAGCCCAGCGCTGGCAGGGTATTTGGGAAATGCTGAGAATAGAGGCGTGGTAAGTGGAGCTTGCCCTTGGTGTTCTgcaaaaggagagagaaatgttCTTCGCTCATATGCATTCAACTTTAAAGAGTCCATCACACTCTGTACCAGTCCGCTGTGCCTTTTCCCTCTAGTTAGCGGGTCATTGGACAAGATCCGTGCCACCCTTTCTTCATCTCAAGACATACAGGGGTGCAAGAGGAAGTTTTATCTCACAGAGTCCAAACCTCCTGATCCATCACCCAAGCGTTGGAAGAAAGAGGATCCGGATATTGTGTCTGATGTGAAATGCCGGAATGTGGATGTTGGTGACTGCAGAGTGTCTGACAAGTCAATCGAAGAGGGACTGTTAAGTAATGATCACAAGAAGCAGCAAGAGGTTGAGAATGCTGACAAGAGTAGTGAGGCCTTTCATGTCCCTAGTGGGGTTTCAGGATTGTCTGATGGTGCACAAATCAAGGATCCTGTGTCTAGCAGTCAGGATAAAACATGGGAGGTACCACCATTGGATGAAACTGTGCAAGATTTGATGCAGATGGTACCTACTCATCAGCATTTATTCTGGAGAAATAAGGATAACTTGTGTTGGTTAGATTCATTGCTTGTGGCACTTGTACACTCCAGGATACTTAGAGAAGCGTCCTGTGAGAATGTGTTTTTGACTGACAAAGTCCCCTGCAAAAATTATACTGTGAAGACCCTGTGTGCAACATACAAGAATTCATATGCATATATTAAAGCCAAGGAACAACAGTGCCACGACAATATTGTACGAGTGCCTTCTGATGATCTCCATAAAGTAGAGCAAGAGCTGGAAGCTCTTCGAATGTCTGCCTTCCAGTTCCTCCAGCCAAAGCTTCAGTGTGAATTAGGTCAGAAGGAGACGCCTGTCTTTGCCCTCCCTCTTCTCCTAAGGTCAGATGACTGGGCTAATAGTCTTTTCCAGCATACCGGTCAGTGGGAATTTAGGTGCACATGCTGTGGATACAATTTCAGCACAAGCATGCAGAGGACTGTAACAACGTTTACACAGATCACGGCTGATTGGCACCCACTCAGAGCAGTCCACCGAGCACAGTGCAGCAACTGTCATAACAAGAACCAGAAGAGGAAATTGGTCTTACAAAGAATTTCTTCAGTGCTTGCACTACACTTTGTGGAGGGACTGCCACGGAGAGACATCTCCAAGTACGCGTTTGATTTCCACGGCACAAACTACAACATCACAACTATTATACAATACAATGAACAACGTGAGCACTTTGTCACATGGATCCATCAACAAGATGGACTATGGTTAGAATTTGATGATTTGAAGTACCCTCACTGTATAACCCACAGGAGGTTTACGCTCCCAGCCAGTCAGTTCCATCTCGTCTTCTGGGAGGCAGATTCCAGAGAGGAGTCCCAGCTCCCTGATCCTCTCCCTGAGAATACCCCTACTCAGAGGATCAGTAAGGTGGTTGATGTCTTTCAAGATATAACTAATTCTGTACCAGATGACACATGCATCGTAGAGGCCTTGACTGGAAATAAAGACAATAATGAGGCTGCTAGTACGTGGAATTCTTCAATAGGCAGTACAACACTGCTTGAGACTTTCGAGGGCCTTTCACATAGTGATATTGTTGCGCTGGTTGAGGGCAAAGTAGATGCTGAAGAAAACCCTCTCCCAAATTTCCAGGAAACGGTAACAGGGCCAGCCGAGTCTAGCGTCACAGAAGCATTTCACCTACTAGAGAAAAGCTCTTTTTATCAAACTCAATGCAGTGTAAAAAACAAGAAAGGTGGTGCAAAGAATGTTTCACCTACACCAGAAATTATTCTTCCCTCAGTGGTAAAAGCATCTGAATCAGCAGACTGTCCAAAAGTGAGCAAGTGTACACCTGCCCTCCACTCTGCAAACCCCACTGCCTCCAACCTATCATTCTTATTTCATCGGCACCCTTCCCACCAGTCCACACCATTAAGAGCACCCCTTCGTGCCACGCATCCAAAAGTTGACTTAAGTATTGACAGCAACGAGGCCCTCTTGGCCAAGCCTGCTGAGCTCTTTGGTGGATATAAAACAAAGAATTCACCAAATCCAGTTTTACCTGGAGGATATTTAAGGCATCCGTTTGTGAAATTGCCCACTGTTCCACAGAAGCCATTCAGCTGCCCTGGTGGCAAAATGCCTGTGGGTCCAGTTTCCACACTGATGAAAAATTCTAGCCCGAACTTCCCAAATTCATCCCCATCAAAGGTGGTCTTATCCACTGAAGCTCTCAGACTGAAACTGATGAAAAGGCTAAAGgccaagaagaagaagctggCAAAGTTAAATCAACTGCTCAGTATAGAGGAAGGTGAGTCTACTCCCAGGCCAGACAGCACTGATATTTCCTCGCCATACTCTGTCACCTCCAGTACATCAGCCTATGATAGCCCAGCATTTGATCATTTCTTTGCTGAGCTTCTATCACCGGCCATGAGCACCAGCCACCTGTCACCTGATAGCACAGGCCTCTTGGAGATACTAACCACCAGCAGCCAGAGTGCTGAGACAACAGAAAGCAGCTCTCAGGAGAACTCAGTACCAGCTTCTAAGCTTCCAGTTCCTCTTCTAAATGACCCTTCATCCACTAATGACAACTTTCTTGATGAATTAATCTCAGGATCAAAGGAGCAGCAATCTGTAATTGAGAATGCTGAACTTAATGCTTTGGATATATTCTTTTGATCAGTGTTTTATGTTCTTTGACCAGTATACAAAAATTAGTTTTTCTATCTAGGAAGTCAAAATTACTAACAAAAGATCCGCTCTTGTCAATAGATGCTATGGATTTCATTAGTATATAAAAACAAGCTGCTGTTGGCTCAACTAAACCGCCAGTGTGAGATCACTTGGCATCTTCCATCCAACATGAAAAGAACAGATTCTGTATCAGCAGTCAAGGGCTGATTCTTACAGAGGCAAATACTTTGTTGTAATGTGTATAGGATTGTGTACATTTGAAGTTGATGTTTCAATATCCAGACCATGCACAAAGTActgcagatttctgtaaaacaaaataaactggaatatttctttatatttgttCTAA

Function

GO:

id name namespace
GO:0030576 Cajal body organization biological_process
GO:0016926 protein desumoylation biological_process
GO:0015030 Cajal body cellular_component
GO:0043130 ubiquitin binding molecular_function
GO:0032183 SUMO binding molecular_function
GO:0070140 SUMO-specific isopeptidase activity molecular_function

KEGG:

id description
K23008 USPL1; SUMO-specific isopeptidase USPL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315390 lncRNA upstream 38657 9336704 ~ 9337088 (+) True G266162
TU315359 lncRNA upstream 111662 9257118 ~ 9264083 (+) False LOC113534874
TU315231 lncRNA upstream 161298 9209848 ~ 9214447 (+) False LOC113535228
TU315387 lncRNA downstream 982 9401288 ~ 9401816 (+) True G266160
TU315388 lncRNA downstream 982 9401288 ~ 9401710 (+) False G266160
TU315385 lncRNA downstream 1625 9401931 ~ 9402718 (+) True G266159
TU315412 lncRNA downstream 46699 9447005 ~ 9447268 (+) True G266184
TU315413 lncRNA downstream 47766 9448072 ~ 9448341 (+) True G266185
XM_026927841.2 mRNA upstream 111634 9256943 ~ 9264111 (+) True LOC113534874
XM_026928171.2 mRNA upstream 123612 9216780 ~ 9252133 (+) True smyd4
XM_026927880.2 mRNA upstream 224046 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA upstream 224046 9135161 ~ 9151699 (+) False zdhhc20a
XM_026909767.2 mRNA upstream 299471 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_034312263.1 mRNA downstream 19359 9419665 ~ 9424855 (+) False LOC113543674
XM_034312262.1 mRNA downstream 20162 9420468 ~ 9424855 (+) False LOC113543674
XM_034312264.1 mRNA downstream 20162 9420468 ~ 9424855 (+) False LOC113543674
XM_026942076.2 mRNA downstream 33514 9433820 ~ 9441067 (+) False alox5ap
XM_026942075.2 mRNA downstream 33514 9433820 ~ 9441067 (+) True alox5ap
TU315389 other upstream 39455 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 705948 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 736017 8633635 ~ 8639728 (+) True G265696
XR_004579838.1 other upstream 1021904 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 1021930 8333502 ~ 8353815 (+) False LOC113544929
XR_003404427.2 other downstream 19359 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 20162 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 304054 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1168722 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 3915632 13315938 ~ 13316216 (+) True LOC113543571

Expression Profile