Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941945.2 |
| length | 1283 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 9 |
| gene id | rfc3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 10014807 ~ 10019753 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006260 | DNA replication | biological_process |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K10756 | RFC3_5; replication factor C subunit 3/5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU315885 | lncRNA | upstream | 11446 | 10003146 ~ 10003361 (+) | True | G266580 |
| TU315784 | lncRNA | upstream | 69228 | 9944113 ~ 9945579 (+) | True | G266499 |
| TU315779 | lncRNA | upstream | 74507 | 9937395 ~ 9940300 (+) | True | G266497 |
| TU315777 | lncRNA | upstream | 74507 | 9937596 ~ 9940300 (+) | False | G266497 |
| TU315778 | lncRNA | upstream | 74507 | 9937641 ~ 9940300 (+) | False | G266497 |
| TU316165 | lncRNA | downstream | 527068 | 10546821 ~ 10547182 (+) | True | G266802 |
| TU316250 | lncRNA | downstream | 552138 | 10571891 ~ 10572147 (+) | True | G266869 |
| TU316252 | lncRNA | downstream | 561106 | 10580859 ~ 10581182 (+) | True | G266871 |
| TU316276 | lncRNA | downstream | 647065 | 10666818 ~ 10668314 (+) | True | G266892 |
| TU316286 | lncRNA | downstream | 712784 | 10732537 ~ 10734630 (+) | True | G266901 |
| XM_026941871.2 | mRNA | upstream | 252110 | 9704360 ~ 9762697 (+) | False | dclk1a |
| XM_026941872.2 | mRNA | upstream | 252110 | 9747639 ~ 9762697 (+) | False | dclk1a |
| XM_034312678.1 | mRNA | upstream | 260311 | 9704360 ~ 9754496 (+) | True | dclk1a |
| XM_026941878.2 | mRNA | upstream | 315489 | 9690378 ~ 9699318 (+) | False | ccdc169 |
| XM_026941877.2 | mRNA | upstream | 315489 | 9690381 ~ 9699318 (+) | True | ccdc169 |
| XM_026941963.2 | mRNA | downstream | 19656 | 10039409 ~ 10041796 (+) | True | zar1l |
| XM_026941964.2 | mRNA | downstream | 19656 | 10039409 ~ 10041619 (+) | False | zar1l |
| XM_026941714.2 | mRNA | downstream | 212953 | 10232706 ~ 10241765 (+) | True | hunk |
| XM_034312729.1 | mRNA | downstream | 235822 | 10255575 ~ 10268750 (+) | True | eva1c |
| XM_026941990.2 | mRNA | downstream | 235822 | 10255575 ~ 10268750 (+) | False | eva1c |
| XR_004579824.1 | other | upstream | 260217 | 9704360 ~ 9754590 (+) | False | dclk1a |
| XR_003404427.2 | other | upstream | 589952 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579762.1 | other | upstream | 589952 | 9420468 ~ 9424855 (+) | False | LOC113543674 |
| TU315389 | other | upstream | 678517 | 9335801 ~ 9336290 (+) | True | G266161 |
| TU314948 | other | upstream | 1345010 | 8668814 ~ 8669797 (+) | True | G265807 |
| TU316249 | other | downstream | 549275 | 10569028 ~ 10570705 (+) | True | G266868 |
| XR_004579830.1 | other | downstream | 3296185 | 13315938 ~ 13316216 (+) | True | LOC113543571 |
| XR_004579771.1 | other | downstream | 4742560 | 14762313 ~ 14771073 (+) | False | vps36 |
| trnam-cau_35 | other | downstream | 6605156 | 16624909 ~ 16624980 (+) | True | trnam-cau_35 |
| trnar-ccu_8 | other | downstream | 6605647 | 16625400 ~ 16625472 (+) | True | trnar-ccu_8 |
