RNA id: XM_026941950.2


Basic Information

Item Value
RNA id XM_026941950.2
length 1789
RNA type mRNA
GC content 0.47
exon number 1
gene id pwp1
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13491329 ~ 13493117 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCATCAAATCGCGCTAGGCTCTGAAAGGACCCGACACGCCTCGTGTTTCCACACGCAGTAGCGTCAATATTTTAGAAGCTCTCAGTACCTCCGGCACTAAAGGCCAAGCTAACTAACGATTCTTTAATAGTTGGTGTGATCATGAGCTCTCAGATAACTTGTGTTGGATGGGTGAGGAAGGGGGTTTCTAAGGAAACACCAGATAAAGTTGAATTGAGCAAAGAGGAGCTGCAGCGCATCATAGCCGAGGCAAAGGATGAATTAAGgcaagatgatgatgatgaggaggagcaggaggaagcGTGCCCAGTGAGTGAGCAAGAGAAGACAGAAACTCAGTCAGCCCCAGAAATGACTGCTGATGATGAAGAAAAGCCAGCGGAAGATGATCTTGCTGAGTATGAACTGGACAAATATGATGAGGAAGAGCTTGAGACGGCTAACCTCGGGGACAGTCTGGCAGGTCTGACAGTGTTTGGCAGTAACGAAGAAGATCCTTATGTCACCATTAAAGACACAGACCAGTATGAACGAGAGGACTTCCAGATCAAGCCTACTGATAACCTTATTCTGGCTGGTAGGGCTGAGAAGGATTGTTGCAATCTTGAGGTTTATGTGTATAACTCTGAAGAAAGCTCTCTGTACGTCCACCACGACATCCTCCTGCCTGCTTATCCACTGAGTGTCGAGTGGCTGAACTTTGACCCCAGCCCTGAAGAAGGCACAGGGAATTATGCAGCCATAGGAAACATGACTCCTGTAATTGATGTGTGGGATCTGGATGTGGTGGACAGCTTAGAGCCTGTGTTTTCTCTGGGCAGTAAGAAgaccaagaagaagaaaaagaagaagaatgccGCCGAGCCTGTAGAGGGCCACACCGATGCTGTATTGGATTTGTCATGGAACAAGATGGTCAGGAATGTTTTGGGAAGTGCTTCTGCTGATGAGACTGTGGTTCTTTGGGACCTCACGCAAGGCAAGCCAGCAACGACACTAAGACGTCACACAGATAAAGTCCAGACTCTGAAATTCCACCCGTTCGAGGCACAGACTCTCATCACTGGGTCTTATGATAAGTCGGCTATCCTATACGACTGTCGCAATCCAGAATCCAGCAATCGTATCTGGCGGTTCAGCGGTCAGGTGGAGCGCCTGGTGTGGAATCACTTCTCTCCCTGCAACTTCCTTGCAAGTACAGAGGACGGCTTCATTTACTGCTTAGATGCCAGATCAGACAAGCTGGTTTTCACACTGAGGGCACATGATGGAGAGGTGTCTGGAATGGACCTGAGCAGTCAAGTGAGCGGCTGTCTGGTTACCAGCTCTGCTGACAAACATGTGAAGGTCTGGGATATTCTCGGAAACAAGCCCAGGCTCATTCACTCCAGAGACATGAAAATGGGAGTGATGTTCTGTGCGGCTTGCTGTCCTGACGAGCCATTCGTTTATGCGTTTGGAGGACAGAAGGATGGGCTGCGAGTATGGAACATTAGTGAGGTAGCTGCAGTGGCTGAGGTTTTCGGCAGTCGGGAGCGTTTGGTTGCCAACACAGTTGCGGACTCCAGCAGCAGCACGGTTGACATGGAGGTCTCTTAATGGAACAGCTAGAGACTTTGTGACCAAAGAActtattttcaaaatacaaaatgagcaaattctgtttactgaaaaataaatcagtatatACTTTGATTTTGAAGTACAAGATAAATTAATGTACCATtattacaaaaatgtatgtgcatttttgtgaagaaataattaaacagaTGTTTAATGCTGAA

Function

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318168 lncRNA upstream 15831 13432734 ~ 13475498 (+) False G268580
TU318169 lncRNA upstream 15831 13432734 ~ 13475498 (+) False G268580
TU318166 lncRNA upstream 15831 13468196 ~ 13475498 (+) True G268580
TU318167 lncRNA upstream 15831 13468196 ~ 13475498 (+) False G268580
TU318172 lncRNA upstream 15831 13468196 ~ 13475498 (+) False G268580
TU318179 lncRNA downstream 28035 13521152 ~ 13526385 (+) True G268587
XR_004579829.1 lncRNA downstream 366679 13859796 ~ 13863635 (+) True LOC117599363
XR_004579837.1 lncRNA downstream 449568 13942685 ~ 13947023 (+) True LOC117599376
TU318956 lncRNA downstream 1062369 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 1103847 14596964 ~ 14597818 (+) True G269268
XM_026942053.2 mRNA upstream 40536 13448733 ~ 13450793 (+) True bsx
XM_026942052.2 mRNA upstream 460649 12813800 ~ 13030680 (+) False opcml
XM_026942051.2 mRNA upstream 460649 12897193 ~ 13030680 (+) True opcml
XM_034312922.1 mRNA upstream 460649 12931650 ~ 13030680 (+) False opcml
XM_026941966.2 mRNA upstream 728989 12755403 ~ 12762340 (+) True panx3
XM_026941800.2 mRNA downstream 1604 13494721 ~ 13503387 (+) True zpr1
XM_026941802.2 mRNA downstream 11540 13504657 ~ 13505550 (+) True LOC113543522
XM_026942030.2 mRNA downstream 36218 13529335 ~ 13539892 (+) True vps11
XM_026941925.2 mRNA downstream 47445 13540562 ~ 13547225 (+) True ift46
XM_026941997.2 mRNA downstream 54220 13547337 ~ 13550191 (+) True LOC113543629
XR_004579830.1 other upstream 175113 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 2920624 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 3736739 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4066474 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 1269196 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 3131792 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 3132283 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 3132365 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 3132856 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile