Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026941974.2 |
| length | 1226 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | c17h17orf49 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 13833427 ~ 13838079 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| id | description |
|---|---|
| K23406 | BAP18; chromatin complexes subunit BAP18 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU318179 | lncRNA | upstream | 307042 | 13521152 ~ 13526385 (+) | True | G268587 |
| TU318169 | lncRNA | upstream | 357929 | 13432734 ~ 13475498 (+) | False | G268580 |
| XR_004579829.1 | lncRNA | downstream | 21717 | 13859796 ~ 13863635 (+) | True | LOC117599363 |
| XR_004579837.1 | lncRNA | downstream | 104606 | 13942685 ~ 13947023 (+) | True | LOC117599376 |
| TU318956 | lncRNA | downstream | 717407 | 14555486 ~ 14556349 (+) | True | G269251 |
| TU318977 | lncRNA | downstream | 758885 | 14596964 ~ 14597818 (+) | True | G269268 |
| XR_004579796.1 | lncRNA | downstream | 760528 | 14598607 ~ 14604363 (+) | True | LOC117599336 |
| XM_026941975.2 | mRNA | upstream | 2231 | 13826792 ~ 13831196 (+) | True | med11 |
| XM_026941927.2 | mRNA | upstream | 10589 | 13811706 ~ 13822838 (+) | True | arrb2a |
| XM_026941928.2 | mRNA | upstream | 10589 | 13811706 ~ 13822838 (+) | False | arrb2a |
| XM_026941670.2 | mRNA | upstream | 48523 | 13782347 ~ 13784904 (+) | False | tmem126a |
| XM_026941671.2 | mRNA | upstream | 48523 | 13782358 ~ 13784904 (+) | True | tmem126a |
| XM_026942071.2 | mRNA | downstream | 46382 | 13884461 ~ 13889981 (+) | True | si:dkey-175g6.2 |
| XM_026941712.2 | mRNA | downstream | 61485 | 13899564 ~ 13904855 (+) | True | slc25a1a |
| XM_034312338.1 | mRNA | downstream | 75929 | 13914008 ~ 13939043 (+) | True | ltn1 |
| XM_034312339.1 | mRNA | downstream | 75929 | 13914008 ~ 13934384 (+) | False | ltn1 |
| XM_026941818.2 | mRNA | downstream | 796412 | 14634491 ~ 14654548 (+) | True | paxbp1 |
| XR_004579830.1 | other | upstream | 517211 | 13315938 ~ 13316216 (+) | True | LOC113543571 |
| TU316249 | other | upstream | 3262722 | 10569028 ~ 10570705 (+) | True | G266868 |
| XR_004579824.1 | other | upstream | 4078837 | 9704360 ~ 9754590 (+) | False | dclk1a |
| XR_003404427.2 | other | upstream | 4408572 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579771.1 | other | downstream | 924234 | 14762313 ~ 14771073 (+) | False | vps36 |
| trnam-cau_35 | other | downstream | 2786830 | 16624909 ~ 16624980 (+) | True | trnam-cau_35 |
| trnar-ccu_8 | other | downstream | 2787321 | 16625400 ~ 16625472 (+) | True | trnar-ccu_8 |
| trnam-cau_36 | other | downstream | 2787403 | 16625482 ~ 16625553 (+) | True | trnam-cau_36 |
| trnar-ccu_9 | other | downstream | 2787894 | 16625973 ~ 16626045 (+) | True | trnar-ccu_9 |
