RNA id: XM_026941979.2


Basic Information

Item Value
RNA id XM_026941979.2
length 2685
RNA type mRNA
GC content 0.48
exon number 24
gene id ddx4
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16279081 ~ 16292173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCTCTTCACTCCggctctccttctcctcttccctCCTTTCCATCGATCTGCTCTTTAGAGTTAAGGTCACAGTCCGAGACTAGTCGCAAAGTGTTTAGgcagattttgttttattaaataaacgcATACCTCTCACATCAACTATCTTCAACTATGGAGGACTGGGAAGATGATCAGAGCCCTGTTGTGAGCAACATGACATTTGGGAATGCTGGGAACTTGTGGAACAGTGGGAGCCAACAAAACAGCTTCAAATGCATCACCACAGatgATGAGGAAAGTTCTTGGAAAAGTGGCAGCCATGGTTTTGGGACTCAAGGGGGAAACAGGGGTCGGAGCTCTAGGGGAGGAGGTGGAGgcttcaagagcttcagttcagGAAATGATGAAAATGCAAACGAAGAAGTTGATGGTGGCAGCCCCTGGAATGGTGGTGGAGACGGATTCAGGGGAAGAGGAGGCAGAGGccgaagaggaagaggaggcttTAGAAATTCCTTCAACTCTGACGGTGATGAAAATGGCAATGATGAAGgTTTCAAAAGTGACTTTGGTGGCAGAGGTGGGCGTGGGGGAAGAGGAGGCCGTGGAGCTTTCCGACAGGGTGGTGATGGAGAAGGCAGAAGACGCTTTGGCAGAGGTGGAGGATATAGAGGACGGGATGAGGAGGTGTTTTCTAAGGTTAATTTTTTAGGACCACAGAAGGATGATGAGGGAAAAGGAGATAGTGGGCCTGCAGGGCCCAAGGTCAACTATGTACCCCCTCCACCACCCGAAGAAGAGAATTCCATCTTTGCGCACTATGCGACAGGCATCAACTTTGACAAGTATGATGACATCCTTGTGGATGTAAGCGGAAGCAACCCGCCCAACGCAATCATGACGTTTGAAGAAGCACAACTCTGTGAGACTCTAAACAGAAATGTTGCCAAGTCAGGATACACAAAGCCTACTCCTGTTCAGAAGCATGGTATTCCCATCATATCTGCCAGAAGGGATCTTATGGCTTGTGCCCAGACTGGATCTGGAAAAACGGCCGCCTTCCTGTTGCCTATTCTGCAGCGTCTCATGAGCGACGGTGCAGCAGCCAGCAAGTTCAGTGAGGTGCAGGAGCCCGAAGTAATCATCGTGGCTCCTACCAGGGAACTCATTAATCAGATTTACCTAGAGGCCCGCAAGTTTGCTTATGGCACTTGTGTGCGGCCTGTCGTCGTTTATGGAGGCACAAGCACTGGATTTACAATCCGAGAAGTGTTGAAGGGTTGTAACGTGTTGTGTGGGACCCCTGGAAGACTGCTTGACATTATTGGACGCGGAAAGGTTGGACTGAGTAAAGTTCGTTATTTGGTGCTGGATGAAGCTGACCGAATGTTGGACATGGGCTTTGAGCCAGATATGCGAAAGCTGGTGAACTCTCCGGGAATGCCTCCTAAAGAAGAGCGGCAAACCCTTATGTTCAGTGCCACCTATCCAGAGGATATTCAGAGGCTGGCAGCTGATTTCCTAAAGGTAGATTATCTGTTCCTGGCTGTGGGAGTGGTGGGAGGAGCCTGCAGTGACATAGAGCAGCACATCATCCAAGTCACTCAGTACTCGAAGAGAGAGCAGCTGCTGGAGCTGCTAAAGACCACAGGTACGCAGAGAACAATGGTCTTTGTTGAAACCAAAAGAAGTGCAGATTTCATTGCAACATTTCTCTGTCAAGAGAAAGTGCCCACTACTAGCATCCATGGCGATCGGGAAcagcgagagcgagagaaagcTCTCGGTGACTTCCGCACAGGTCAATGTCCTGTGCTGGTAGCTACTTCTGTCGCTGCTAGAGGATTAGACGTTGAGCATGTCCAGCATGTGGTGAACTTTGACCTACCAAAAGACATTGATGAGTATGTGCACCGCATTGGGAGAACAGGCCGATGTGGAAACACAGGAAGAGCCGTGTCCTTTTTTGACCCCGACTCTGATACCCCTTTAGCCCGCTCTCTGGTCAAAGTCCTCTCGGGGgcccagcaggaaGTTCCTTCATGGCTGGAGGAAATTGCATTTAGTGCTCATGGCACCACAGGGTTCAACCCACGTGGGAAGGTGTTTGCCTCCACTGACACTCGCAGGGGTGGATCCTTCCTGAAGAACCAGCCACCACAACCAGCTGCACAGAGCACTGCTGCAGGAGCTGATGATGAAGACTGGGAGTAGATTTACTTTTAGGTTTCTTTTTTGTGCAATATTCCTgtgttctgttttatatttttatgttaaagaAAAGAAGCCTATGGACCTACAGAGAGATTTGCAGAGAAAGTATAGAATGGCAGGCCTTGAGCTAATGTGCAGAAAAAGAGCCACAGGTTCAACCTGAAGTTAAGCTTCACAATTTAATGTCAGGAAATTTGGGATGAATCACTTAACTGCTCAAGTGTTTGCacttaatgttttcttttcttttggttttCCAGTAGAATTGCTAATAGGTAGATTTCACTGTGTGGATTATTCAGTACACTGATTTTGTAGAAGCCTTCAACTGAAGGTTGCATCTGCCCTCTTTCAACAAATAGCTCTTTTCTGTCAGATGTTTCCAGGTTGCATTTTGATCAATATGTGTGAAGGCATTTgttgttgggggaaaaaaaaaaacgttgttTTGCCAATGTGCCATGCCAATAAATTCACACAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320253 lncRNA upstream 14268 16232165 ~ 16264813 (+) True G270341
TU320194 lncRNA upstream 140772 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA upstream 142215 16135309 ~ 16136866 (+) True LOC117599367
TU320136 lncRNA upstream 284026 15994853 ~ 15995055 (+) True G270236
TU320120 lncRNA upstream 290226 15988653 ~ 15988855 (+) True G270229
TU320370 lncRNA downstream 1699 16293872 ~ 16294107 (+) True G270437
XR_004579797.1 lncRNA downstream 35446 16327619 ~ 16364742 (+) True LOC117599337
TU320399 lncRNA downstream 36338 16328511 ~ 16328772 (+) True G270449
TU320453 lncRNA downstream 59075 16351248 ~ 16351459 (+) True G270495
TU320479 lncRNA downstream 92857 16385030 ~ 16385932 (+) True G270520
XM_034312471.1 mRNA upstream 21393 16246951 ~ 16257688 (+) True sh2d4a
XM_026941724.2 mRNA upstream 21393 16246951 ~ 16257688 (+) False sh2d4a
XM_026941727.2 mRNA upstream 21393 16246955 ~ 16257688 (+) False sh2d4a
XM_034312472.1 mRNA upstream 21393 16247843 ~ 16257688 (+) False sh2d4a
XM_026941726.2 mRNA upstream 21393 16248048 ~ 16257688 (+) False sh2d4a
XM_026941919.2 mRNA downstream 6921 16299094 ~ 16310306 (+) False LOC113543581
XM_026941921.2 mRNA downstream 6921 16299094 ~ 16310306 (+) False LOC113543581
XM_026941920.2 mRNA downstream 6921 16299094 ~ 16310306 (+) False LOC113543581
XM_026941922.2 mRNA downstream 6921 16299094 ~ 16310306 (+) False LOC113543581
XM_026941923.2 mRNA downstream 6922 16299095 ~ 16310306 (+) True LOC113543581
XR_004579771.1 other upstream 1508008 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2962865 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5708376 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6524491 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6854226 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 332736 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 333227 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 333309 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 333800 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 333882 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile