RNA id: XM_026942003.2


Basic Information

Item Value
RNA id XM_026942003.2
length 2378
RNA type mRNA
GC content 0.42
exon number 15
gene id tmem135
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11084029 ~ 11098340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGCGCGTCCCCGCGCTCTTCAGTAAACATGGCTGCTCTCAGCAAGTCCATACCGCACAACTGCTATGAGATAGGACATACATGGAGCCCATCATGCACAATTTCAGCACTGCAAGTCACAGCCGGGGCTCTGGAGGCCTCTCTCAAAATATACGCACCACTATATCTAATTGCAGCTATCctaagaagaaggaaaaaagactACTACAAGAAGAGACTCCTCCCTGAAATCCTGCAGTCTGTGTCATTTCTGACTACAAATGGAGGCCTGTACATCGCCTTTTTCTGCCTTCTTAGGAAGCTGCTGGGCCGTTTCTACTCCTGGTCGGCAGGCTTTGGAGCAGCACTGCCAGCTTCGTACATCGCTATTCTGATAGAGCGCAAAAGCAGGAGAGGACTTTTAACAATATATATGGCAAACTTGGCAACTGAGACAGTATTTCGGATGGCTGTCACACGAGGCATCATTAACCCTTTAAAACATGGAGAGGTTCTCCTTTTCTGTATTACTGCGTCactttacatgtttttcttcagaAGTAAAGATGGACTTAAGGGTTTTGCGTTCTCAGCATTAAAGTTTATTGTAGGGAAGGAGGAAATCCCCACACATTCCAGCCTTGCTGAGCTGCCCAGTGCGTCTCGCTCAGAAAGGCCAGCTTTACCTCCAACAGACGCGGAACAGCCTTCGTCCTCTCGAAGGACCATCACTGCTCTGACTCGCAGGCTGCTAGACTCTCTATGTAAACACGGACCCAGACATAGGTGTTGCAAACACTACCAAGACAACTGCATCTCCTACTGCATCAAAggATTCATCCGCATGTTTAGCGTGGGTTACCTCATCCAGTGCTGTTTGAAGGTTCCATCAGCATTTAGGCACGTTTTCACCAAACCCTCTCGTCTTCTATCACTACTCTACAACAAGGAGAATTTCCAACTAGGAGCCTTTCTCGGTTCTTTCGTCAGCATTTACAAGGGAACCAGCTGTTTCCTTAGGTGGGTGCGTAACCTCGATGATGAGCTCCATGCGCTTATAGCAGGTTTTCTCGCCGGCATCTCCATGTTCTTCTATAAGAGCACCACCATCTCAATGTATCTCTTTTCCAAGCTTGTGGAGACCATGTACTTCAAAGGCATCGAGGCAGGACACTTCCCCTACTTCCCTAATTCTGACACAGTAATCTATGCCGTCTCAACTGCCATCTGCTTCCAGGCCGCGGTAATGGAAGTGCAGAATCTGCGACCATCATACTGGAAGTTTCTTCTGCGACTGACCAAGGGCAGgTTTGCTCTGATGAACAGAAAAGTGCTGGATGTGTTTGGGACTGAGGCTTCTAGACACTTTAAAGACTTCACTCCCAAACTGGACCCCAGATACACACTGTTTGCTCAAGATGCAGACATGCAGCTGAGTTAACAAGCCATGGAGACCACGGGAGTGACCACCCAGACAGCTCTTTCAACAAATAATGTGAATGGCATTGCATTGGTTGCTAGTACAAAATTCTGGCATTGCCCAGCagcagtattaaatcctcataTCCACTCATAATCCTTGGAATTTAATTGGAACTATTTCTCACCAGAGTTAAACAGATTGAAATGTTGCCAGAATTAAGGGTTCTTTACTTTTTATGCCAGTAGGTATAAAGCTTCTCATCATTCAGTCATTACAATTGTGGTGTTGAGACCATAATTTTTATTCTAGTTGAAATTATGAAAATCTGACATAATGCCTTAATTTCAGCTGTGATTTTAAACTAGAATGCTTAGAGACAAAAGAATGTGTAACACTATTCTAACTATATTCTATGGAACAATCTGGACTTTCATTTGCTCAAGTCACCGTGTGTGAGCAAATGTACATCAGCCATGTGTTTTTGAAAAGAATCAGGTTTCCTCTGTACTGGAATTAAACTTTTTATGTTAGAAAACTTACTGATATTTTCTGAAGTACATAAAACATTGCTGAAAGCGTTCAGGGGAGAAAAGTAACAGTTTAAGTTGAACGCTACTTGCCCAAGCTACTTGATATGCACTGATGGAGTACATGCTCTGGATAGAAAGCAGGTTCGTATAGTGAAACACATAGAATATGTGTATAATTATAGAAACAGTACAGTAGCAcagattttctttaattttaataaacatgtagTGATTATATATGTAATCAAAATATTATACTTGTGTGAAActttaatttatgtaaaattgttgctgtttaatataaaaagaatttatattaaaatgtcttCCACTGTATTTCTGTGGTTAGTTTAATGTCCTTCTGAACAGTAAACTAACTCAAAATGTAGTAAAAACTTACTAGGCAAATGCCTTCCAGATTTAATTAAAggtccatatttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316497 lncRNA upstream 27008 11056612 ~ 11057021 (+) True G267070
TU316486 lncRNA upstream 41639 11042217 ~ 11042390 (+) True G267062
TU316475 lncRNA upstream 47799 11035998 ~ 11036230 (+) True G267051
TU316348 lncRNA upstream 201764 10881107 ~ 10882265 (+) False scaf4a
TU316536 lncRNA downstream 13046 11111386 ~ 11111597 (+) True G267103
TU316726 lncRNA downstream 334319 11432659 ~ 11432862 (+) True G267257
TU316789 lncRNA downstream 526034 11624374 ~ 11627972 (+) True G267314
TU316792 lncRNA downstream 552089 11650429 ~ 11652188 (+) True G267317
TU316842 lncRNA downstream 730229 11828569 ~ 11828818 (+) True G267362
XM_026942029.2 mRNA upstream 420 11074655 ~ 11083609 (+) True cct8
XM_034312913.1 mRNA upstream 48702 10978094 ~ 11035327 (+) True grik1a
XM_026941969.2 mRNA downstream 49255 11147595 ~ 11151753 (+) True LOC113543610
XM_026941625.2 mRNA downstream 53735 11152075 ~ 11155690 (+) True kpna7
XM_034312809.1 mRNA downstream 68797 11167137 ~ 11219048 (+) True LOC113543473
XM_034312728.1 mRNA downstream 136219 11234559 ~ 11245766 (+) True mtnr1bb
XM_026942019.2 mRNA downstream 195357 11293697 ~ 11304416 (+) True si:ch1073-15f19.2
TU316249 other upstream 513324 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1329439 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1659174 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1659174 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1747739 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2217598 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3663973 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5526569 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5527060 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5527142 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile