RNA id: XM_034312714.1


Basic Information

Item Value
RNA id XM_034312714.1
length 2319
RNA type mRNA
GC content 0.44
exon number 19
gene id tpte
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 14788906 ~ 14796074 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTAGGACAGCATGCAGTGAGCAGTGTGGTTTTGGCTTTAGTTTTTAAAGCATTTGTGGAAGTAGAAACAGCAGGATTgcagaaaaagcaaaaagaggaaaagtaaCCATCCGATGCTCACTGGCCACAAAGACTCAAGTGTAAGAGGGAGCATGCATGGTTCCTAAATCTCAGTATTGCTGAGCTCTTGGAAGGCAACCTGGGCACTTTAGGACATTTTGAGGAACGGCATGATGGAAGAGGCAGTGGTTCAAATCGATGATGGCAAAGAGGAAAGTGAGGAACCCGACACCATGTACTACCATGTTAGGAAAAGGATAGCTCCTTTTGTGATGTCTTTTGGTTTTCGTGTCTTTGGCCTGGTGCTCATCCTTGTGGACATTATTCTGGTCATTGTTGACCTATCACTGTCATCCGAGAGCCGTAAGAGTGTGGGGACTACTTTGGAGGCCATCTCGCTTGTcatctccttcttcttcctcatcgATGTGCTTCTACGAATTTATGTAGAAGGATTTAAGGTGTACTTCAGTTCCAAGCTGAACATTGTGGATGCCTGCATTGTTGTCATCACTCTGGTTGTCACTATGATGTATACATTCTCTGATTTCTCAGGAGCTAGCCTTATTCCCagGTTAGTGACATTCTTGAGGTCCTTGAGAATAATTATCCTGGTGCGTATCTTCCGACTGGCCTCCCagaagaaagagatggagaaggtCACTAGAAGAATGGTATCAGAGAACAAAAGACGGTACCAAAAGGATGGATTTGATTTGGACCTCACATATGTTACAGACAGAGTCATTGCAATGTCCTTCCCCTCATCTGGGAAACAGGCCCTGTACAGGAATCCCATCAGAGAAGTTGTCCGATTCCTGGACACTAAACACCTGGATCACTACAAAGTTTACAACCTCTGCAGTGAGAAAGGTTATGATCCAAAACATTTCCATTATAGAGTGGAACGTGTGATGATTGATGACCATAATGTGCCATCACTAGAGGACATGCTGAGATACACCGCCAGTGTTAGGGAGTGGATGGCTGCAGACTCACGCAACATCATTGCTATCCATTGCAAAGGGGGAAAAGGGCGTACTGGGACAATGGTGTGCACGTGGCTAATTGACAGTGATCAGTTTGAAAGTGCAGAGGACAGCCTGGACTACTTTGGTGAAAGGCGAACAGATAAAAGCATGAGCTCAAAATTCCAGGGTGTCGAAACACCGTCTCAGAGCCGGTATGTTGGATACTATGAGACCATGAAGAACAAATACAACCGGCAGCTGCCCCCACCAAAAAGCTTGAAAATCAAAAGTCTGCGCATTCACTCAGTCGCAGGTGTTGGAAAGGGCAATGGCAGCGATCTGAAAGTACGCATCATAGTGAAGAAGGACCAGGTGTTCCAGTGCGTCTGTGCCAAACAGGAGAACTGTGCGCTTTTCCCTGATGTTGGAAACAACGCAGTGGTGATCAGTTTACAGGACGGCCCAGTGGTTTGTGGCGATGTGAAAGTCATGTTTGAATCCAGTGCTGGACTTCCTAAGGGATATGAAGACTGTCCATTCTATTTCTGGTTCAACACTTCATTTATAGAGAACAACAGGCTGTATCTGTCGAGGGAGGAACTGGACAACCCGCACAAGTCCAAGACCTGGGACATCTATAAAGAGGACTTTGGTGTGACAGTGTCATTCAGTGACCCCTGAAGAGAGAGTTAATGATGTGATACACACTATAGTTTAACACTAACCTCATTTCTATACCCTGCTCTAATTAGAAGAATTGTCACTGAGGCATATGTAGGATTTAGGCCagaatgttgtgtgttttctttactCCTTGTTCAAAAAGGGAAACTGTAAGTAAAAAGGGAAATGTCTGGACTTATGGTACAATATTTAGCAGCAcagatttaaaggaaaaatacacaatttGCCAAAATGTTGCAATGTTCTTACTACATGTGACTTGACTGGCAAGATCAAGAGCATGAATCGGATTTGCCTCTCAAGTTTCACAATGTCTTGTGTGTTTCAGAAGGAATTTTTTCTGAGCCAAAATCTAGCCTTCAGtatgcacaatacacacacgaAGTTTCACTCAGCATTGTGGGGTTTCGCTGAATTAGTAAAACTTTACATTAGGTGTATAGGCTACTGCTTACGTGGTGAAATTCAGCTGACAGTAAGCACTCCATATCCACTATGGAActgctatttaaataaatttttgtttGGTATCTCTGGAAGGGGTAGAGGATGGGGAAAGGTATTTTGATGTAACAAAGAAATTAAAGTAACTGAGGAAGTAAA

Function

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319140 lncRNA upstream 2862 14785647 ~ 14786195 (+) True G269396
TU319137 lncRNA upstream 5372 14782961 ~ 14783685 (+) True G269393
XR_004579796.1 lncRNA upstream 184694 14598607 ~ 14604363 (+) True LOC117599336
TU318977 lncRNA upstream 191239 14596964 ~ 14597818 (+) True G269268
TU318956 lncRNA upstream 232708 14555486 ~ 14556349 (+) True G269251
TU319183 lncRNA downstream 64681 14860755 ~ 14863006 (+) True G269431
TU319360 lncRNA downstream 332223 15128297 ~ 15157245 (+) True G269569
TU319374 lncRNA downstream 378194 15174268 ~ 15174492 (+) True G269583
TU319438 lncRNA downstream 483009 15279083 ~ 15289443 (+) True G269635
TU319448 lncRNA downstream 500470 15296544 ~ 15298327 (+) True G269641
XM_026942044.2 mRNA upstream 9470 14772902 ~ 14779587 (+) True LOC113543654
XM_026942045.2 mRNA upstream 9470 14772902 ~ 14779587 (+) False LOC113543654
XM_026941916.2 mRNA upstream 17984 14762313 ~ 14771073 (+) True vps36
XM_026941707.2 mRNA upstream 46369 14735433 ~ 14742688 (+) True LOC113543478
XM_034312822.1 mRNA upstream 57794 14675105 ~ 14731263 (+) True mtus2a
XM_026942024.2 mRNA downstream 25789 14821863 ~ 14824794 (+) True zgc:171929
XM_026942025.2 mRNA downstream 25789 14821863 ~ 14824794 (+) False zgc:171929
XM_034312891.1 mRNA downstream 122979 14919053 ~ 14922087 (+) True LOC113543668
XM_026942065.2 mRNA downstream 170096 14966170 ~ 14977527 (+) True LOC113543667
XM_034312518.1 mRNA downstream 183313 14979387 ~ 15042992 (+) True LOC113543506
XR_004579771.1 other upstream 17984 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 1472841 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 4218352 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 5034467 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 5364202 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 1828835 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 1829326 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 1829408 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 1829899 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 1829981 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile