RNA id: XM_026942019.2


Basic Information

Item Value
RNA id XM_026942019.2
length 4243
RNA type mRNA
GC content 0.39
exon number 9
gene id si:ch1073-15f19.2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11293697 ~ 11304416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaggaaccagactcaaaagggaacccatcctcatctgagtgacactgCGATTATAGTAATGTCTCTGTATACTATGTAGGCAATTAATGCTAATTGTATTAACAGGAaattgagtatgagcatcactAGAATTTTAACTTTAAGGCTATCATATTAAACTGTTATCAGTTGTTCAaagatggagacttgagtgtaaactgttcttagcaattccAGTCTTTAGGCAATACAAATAGGAAGAACATCTACCACCATCTTTAGGGTGTCTCTGTGGTACCATCCTCATTAATCTCATGCTGATCTTTAGACTATCCATGCAGggtcatcctcagcagcagagagtgattttcaggtaagtgaggctccaagcagaagtagactGCTTGGATTGTGAAAACAGTGGATtatgagaacagctgaaaagatcattggagtctctctacccaccatTGATGTCTCTTATAACAACCGCTGCgtctgcaaagccaccagcaacCACCCTCTCACCCATCTCACGGACGCTTCACCCCCCTGCCACTTGGAGCATCTATGTGACTCCCAGCGGActctgcaacagtttcttccctgaggcagtcagatctcaacaccctgctgcctcccaacgcTCACCTGGGCTAGGACACCAAATCCAGTAGGACTTCACACCTACTGGTTTTCACCTGCTACATGGTTTTCAGGTTACAGCAcatattctgtgtatttattgtccctTGCATGGTATTTATTGTCCCACGCATGGTCTGGGAGAAACGATattttgttccaatgtatacaagctgtgttgaggaatgacaataaaaacccacttgaatTGAGAATTAGGGCTTCAGGATaaatcaggcaggtccagagagcagaaggagtcaggatcagaGAGCAGAATGtgtattgagagagagagttagagagagagagagagagagagagagagagagaggaggtgcCCTGTGACATAAAGCaaccagccactccaccgtcaacaaatcTGAGTGTATGCGTGTGGGGGGACGTGTCAGTTGGGGCAACATCATctaaacatcccagtttaccaaaacacCCTATGCCCATGAATCTTCCAAATCTACATCTTTACCTAAGAGAAAAGCTTATTAACAAGACTTGaccaaaaatatgttttcagcctagacttaaagactgagactgtgtctgagtcctgaacactaattggaaagctgttccataactttgtaactttgtaagagaaagctctgcccgcTGCTATAGCTTTCATTAGTTGAGGTAAATAGCATACTAAATAACACAACTAGAATGCagaattttttatattatatttccatAATCTGTAACCCAAACTATTTGTGTATTATAGTTTTACTTATAATTTTAACAAGAcaatatttaattcataaatagAATAGAGCAGATTGTTTATAATGATTTGTGATGTTTTAATATTGGTTTACATTGCAGCTGGACAGTGAAACAAACAGCATGACTCCATCTTGCAGGAGGTTACAGAGAAGGATAGCAGAGACTATGTGTGTGATATTGCCTCATTTCCTCAATGGCAGCATCATAACCTTCACAAACGTGCAAGTTACAGGAATTCAGAGTGTCTTCATAGAACACAAAACAGAGGAGAACGCGACAGTTGGACAGAACATCAGCCTTCCGTGCATCATGCTCCATGAGCATccaaaaatcattcagttacaATGGCATAAAGAGGGAGAACAGGGAGAGCAAAAATTAGTGGTGTTTAATCCTGCCTATAGTCCTTCTACTCCTTCCTCTGTGGGAACTAAATTGGAGCTGGTGTACAATACAAACACCACAAAGCTGCGAGGCTCCATCTTGCATTTGCAGGAGGTTACAGAGAAAGATAGCGGAGTCTATGTTTGTGATATTGCCTCATTTCCTGATGGCAGTATCAAAAGCTCTACAAAAGTCCAAGTTACAGTGCCAAAATTTTCAATGAACGTCACGCCCACTGACAGAACTGTAATAGAAGGGGACACAGTGAGCATCTCATGTGTCAGTGATCCTCCACCTGAAAAGTACACGTTATTATCCTCACTGAGTCAATCAATAATGGAAAGTCAGGATGGAAAGTTCATAATTCAGAACATTACTCGGCACAACAGTGACCTGATCTGTCAGCCCCGCTGGAACTCATCAAACCAACACTTACAAAGCCTCAGTGCAACTGTGCACCTCAATGTAGACTTTCTTGACAACATAGAGTGTAATTCCGAGAGCCAGATACAAGTTGAGACTGGGACAAGTCTGATGATTACTTGTAATACAAAGTCTTCCAAGTCCTTGAGTTTTGTCTGGATGAAGGACAACATGACAGTGTCCTCCAGTGCCAGTATAAACTTGCGGTTAGTGAGTCCTGATCAATCTGGGATTTACAGCCTGATTGTTCAGACTGGAAATACTCGTCTACACAGACAGAAGGATTTTACAGTTACTGTGATAAACAGGATACACACGGAACATCTGAGCAGCACCATGACtatggaaacaacaacaaagataAGTATCACAACTATGACAACACCCAAACTTAACATTACAATGCCGACATCCCAACCGCACCATACCAGCAGCACCACTGACACCCCTGAGACATCTACAGAGGAAGTCATGTATATCAAAACCTCAGCTCCATCTACTGGAAATGTCACCGTGGTGCATGTAAATAGCACAACACCACACACGGATGTAAAGAGCTCAGCCACCAccttcacacactcctcaaGTGAGGGCAGGACACTGTCTGAGATTTGCTGTTCATCCAGCCCAGGATCTACCAGCACAGAAATCAGCCATGTACACCCAGATACCAGTACAATCACCTCTACATCGGCTTCCATAAGCAAGGCCACTGTGGGAATAAGCAATGTCTCAACAACCAAAATTACAAGAAAAGATGTGAGTACCACTAAGTCACATGTGGTGTTTGCTATCATCCCTGTTGTTCTTGTGTTGGTTCTGATTGGGATTCTTTACCGGCAATACCTCATTCAGAAAAGGCTGGATAAGCCACCCCCATTCAAGCCTCCTCCTCCACCAGTGAAGTACACATCAGCAAGAAATCATGATATACCTACTACTGACATTTTAGTATGATGAACTCATGCATCAAAACAGAGCCTTTTATACTGATCATATGTGTTTTTTCATGTGTCTAGATTTCTATTGTGCACCTTAAGTTTTTGGTttatgtgtttttggtttttagggtttttagtttttttttttttttgtctgcctGTAACACACATAATATTAAAGCTATTCCTTATTTTATAAACAGGAGCCCTATTTCACACTCTGAAAGATAAACACTGTCACTATCTGTCTAGTTTGTAACATCTTCCCCTGAAATATCTGATAGGTCAAAGAGCATGAACAAGAAAACAGGTcttcaaaagaaaaagacaaaaagtagCATGAACATTTTACCTGACGTATAAAGCTATAAAAAGACCAAAATCTCTATTTTGATCAAATTCGATAATTAACAAACTTTTTTCAGGTACATAGAATGCAAACTAAGACCTTCATGGCATAAATTCAATATTGCAGGATCTGCTTTAAGTATCTGAGGATATTTAAATTGTCATGCAacaatttaaaatctaaataaatgacagtttatttatttatgtcctTTGATAGGCTTGATTCTtccagaaggtttttttttgtaataacaaGGCCAAAAAATGACATTCCTGGATAAATTACTAAAGGTTTAGCATCAAATTCTTAAGAAGTGTGTTATAAACAACATTGTTGGCCACATCATGGTACACTTGCACTTGCACCACAGTGCTAAAGTTGTTTTAATCCATGAGCAGATACTTTTGTGATATGGCGAGTTCGAAGCTTTACCTTTGAATGTCTGAATGTAAATAGTTTTCTTAAATGCAAAAAATCCTAAGTTGAATAACATGTATTCTTTCTATGTATTCTATATACTTTTTCTGTGAGTTACCTGCATGTTATTATGAAAGCAATATTCAGGTTCCACTGATAATATCTCACACTACAAATGTGCAAGAAATTCCATATGCAAAGTTCAACACTTCAAATTGCTGTTGTTTGTTATATCAAGcctgcttttttactttatggtaaattatactgtatacaaacCATGAATTATCATTTCAAATCTTTTGTGATTTATTGCAGCAAACATAAGTAAATACATTCTTTGGTCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316536 lncRNA upstream 182100 11111386 ~ 11111597 (+) True G267103
TU316518 lncRNA upstream 205834 11086248 ~ 11087863 (+) True G267090
TU316497 lncRNA upstream 236676 11056612 ~ 11057021 (+) True G267070
TU316486 lncRNA upstream 251307 11042217 ~ 11042390 (+) True G267062
TU316475 lncRNA upstream 257467 11035998 ~ 11036230 (+) True G267051
TU316726 lncRNA downstream 128243 11432659 ~ 11432862 (+) True G267257
TU316789 lncRNA downstream 319958 11624374 ~ 11627972 (+) True G267314
TU316792 lncRNA downstream 346013 11650429 ~ 11652188 (+) True G267317
TU316842 lncRNA downstream 524153 11828569 ~ 11828818 (+) True G267362
TU316866 lncRNA downstream 559471 11863887 ~ 11868663 (+) True G267381
XM_034312728.1 mRNA upstream 47931 11234559 ~ 11245766 (+) True mtnr1bb
XM_034312809.1 mRNA upstream 74649 11167137 ~ 11219048 (+) True LOC113543473
XM_026941625.2 mRNA upstream 138007 11152075 ~ 11155690 (+) True kpna7
XM_026941969.2 mRNA upstream 141944 11147595 ~ 11151753 (+) True LOC113543610
XM_026942003.2 mRNA upstream 195357 11084029 ~ 11098340 (+) True tmem135
XM_026941605.2 mRNA downstream 3565 11307981 ~ 11314013 (+) True LOC113543445
XM_026941604.2 mRNA downstream 10178 11314594 ~ 11316563 (+) True timm10b
XM_026941602.2 mRNA downstream 15661 11320077 ~ 11337679 (+) True ilk
XM_034312317.1 mRNA downstream 33435 11337851 ~ 11345580 (+) True LOC113543443
XM_034312710.1 mRNA downstream 43165 11347581 ~ 11366351 (+) False emsy
TU316249 other upstream 722992 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1539107 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1868842 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1868842 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1957407 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2011522 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3457897 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5320493 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5320984 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5321066 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile