RNA id: XM_026942025.2


Basic Information

Item Value
RNA id XM_026942025.2
length 1508
RNA type mRNA
GC content 0.53
exon number 4
gene id zgc:171929
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 14821863 ~ 14824794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTAGGCAGGCCGTGCCCTCCATGACGGCAGAGCCAGTGGGCCATTTGCATGGAAGGACCAGTTGAATGAAGAGACCAGATTCTCACTACCTGGCATGCAAAATCATCAGGGCagcagttaacacacacacacatacacacacacacacgcacacacacacacacgcacacacacacaggtgtgtctGCTGCCGTGGCCTCCCTCCAGAGGTATGGAAATGAGCACTGAGATTTGCGCTTTCTAACCGCTGAATAGGGTGAGGGGGGGAGGATGGttagaagacacacacataggAGGATTACAGTGAAGAGGGAGGCACAGATCAGCTGTGAGCACAGTGTCTGTGGACAGGTGAAGGGTTGCAAGGTTTAAGGTGATGTGGTGGAGTAGATGCAGTTCCAGTTAGAGTTTGAGTCGAGTTAAAGTTTGAGTTGCGATTGTAAGTAAAGCTACATAATCAGTTAGATTGGTTCAAAGGAGGCTCAAGGAAAGAAAATCAAGGATGCCACGTTCATTTCTGGTGAGGAGGAAGCGAGAAGCGTGCGGTGTATGGATGTGGGGAGATGCTCAAAACTCATCCTGGATCAATCACATCTGTGCAGCAGTGGCAGTAAAGGCACCTGGCATTGTCGGTCTGCAGTCAGTGCCGACATTAAACAGTGCTCCTTCTGGACCGGTAAACACATCCAGCAGTGCTGACCTAGAGGCAGCTTATGTGTCCAGCAGTAATGAATCAGGAACAATGAGTCCTGAGCACTGCCACTCTCAGCAGCCTCCTCAGAGTCTCTTTCAGACAGTTCCTTCGTCTGATCCAGCCTCAGCCACCAGAGCCAAGGTTCCTGCCCCCAGCTCTGGAGACTTCCAGTGTCCTGTGTGCCATAAAATTTTCCCACTCCAGCGCATGTTGACGCGACACCTGAAGTGCCACAGCCTTATCAAGAGGCACCCGTGCAGGTACTGCGGCAAAGGCTTCAACGACACCTTTGACCTGAAGAggcacatgcgcacacacacagGTATCCGGCCGTACAGGTGCGAGCTGTGCGAGAAGGCTTTCACGCAGCGCTGCTCGCTGGAGTCTCACCTGCGCAAGATCCATGGCGTGAGGCAGCAGTACGCGTACCGGCAGCGCCGCTCCAAGATCTTTGTGTGTGAGGACTGCGGCTTCACTTCCAGCCGGCCCGACGAGTACTTCATGCACGTGCGTCAGAGGCATCCGGAAAGTCCTGCACTGCGCAGATACTACCGCAAACACATGCAGGAAACGCCCACTCAGCCCCGCATCTCGCCCTTCATGCTCTACCCAACCACAGCGTTTTACATGTGAAACCCAACGCACTGTTTCTCTGAGCCTCTGCTGCCGCTGCATACGTGATAACACGAGCAGGCAGCTTCATGTAGGCCCACTGGCATGATGTTATACaaatacgctatatggccaaaggtttgtagacacctgaccatcacacccacatgtgttttttgaacatccctttccagatttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319140 lncRNA upstream 35668 14785647 ~ 14786195 (+) True G269396
TU319137 lncRNA upstream 38178 14782961 ~ 14783685 (+) True G269393
XR_004579796.1 lncRNA upstream 217500 14598607 ~ 14604363 (+) True LOC117599336
TU318977 lncRNA upstream 224045 14596964 ~ 14597818 (+) True G269268
TU318956 lncRNA upstream 265514 14555486 ~ 14556349 (+) True G269251
TU319183 lncRNA downstream 35961 14860755 ~ 14863006 (+) True G269431
TU319360 lncRNA downstream 303503 15128297 ~ 15157245 (+) True G269569
TU319374 lncRNA downstream 349474 15174268 ~ 15174492 (+) True G269583
TU319438 lncRNA downstream 454289 15279083 ~ 15289443 (+) True G269635
TU319448 lncRNA downstream 471750 15296544 ~ 15298327 (+) True G269641
XM_026942006.2 mRNA upstream 25789 14788906 ~ 14796074 (+) True tpte
XM_026942008.2 mRNA upstream 25789 14788906 ~ 14796074 (+) False tpte
XM_026942007.2 mRNA upstream 25789 14789057 ~ 14796074 (+) False tpte
XM_034312714.1 mRNA upstream 25789 14789057 ~ 14796074 (+) False tpte
XM_026942045.2 mRNA upstream 42276 14772902 ~ 14779587 (+) False LOC113543654
XM_034312891.1 mRNA downstream 94259 14919053 ~ 14922087 (+) True LOC113543668
XM_026942065.2 mRNA downstream 141376 14966170 ~ 14977527 (+) True LOC113543667
XM_034312518.1 mRNA downstream 154593 14979387 ~ 15042992 (+) True LOC113543506
XM_034312505.1 mRNA downstream 410474 15235268 ~ 15242258 (+) False c17h5orf63
XM_026941988.2 mRNA downstream 414016 15238810 ~ 15242258 (+) False c17h5orf63
XR_004579771.1 other upstream 50790 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 1505647 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 4251158 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 5067273 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 5397008 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 1800115 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 1800606 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 1800688 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 1801179 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 1801261 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile