RNA id: XM_026942030.2


Basic Information

Item Value
RNA id XM_026942030.2
length 3311
RNA type mRNA
GC content 0.46
exon number 16
gene id vps11
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13529335 ~ 13539892 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGACCCTAATGTAAGTCACATGATTTGAACAGGGCTCGGTGGTAAAATGGCTGCGTTCTTGCAGTGGAGgcgatttgttttttttgataaaGAAACGGTGAAAGATCCGAGCGAGAATGGAAAAAACTTTGCGTTGCCGCCTGGCATATCGGCTTGTGATTCAGGCAGGGGACATGTTGTTCTCGGAGATATGGAAGGTCAGATTTGGTTTTTATCAAGATTGTTGCAGCTGACCGCCTTCCAGGCATATAAACTGCGGGTGACACACCTGTACCAGCTGAAACAGCACAGCATCCTGGTGTCAGTGGGTCAGGACGAGCATGGCATTAATCCACTGGTAAAGGTGTGGAACACGGATAAGAGAGACAGCGGCAGTCCTCTGTGCACTCGTATATTTCCAGCCATTCCTGGAAACAAACCTGCAGAAGTGTCCTGTCTCAGTGTACACGAGAACCTCAATTTCATGGCTATAGGCTTTACAGACGGCAGTGTAGTTTTGACTAAAGGTGACATCAccagagacagacacagtaAAACCCTCACCTTGCATGAAGGAAGCTGTCCTGTCACAGGTCTGGCTTTCCGCCAGGCGGGAAAAGTCACCCACTTGTTTGTGGCTACTCTTGAGAAAGTACAGTGTTACACCTTGTCTATGAAGGAGTATCCTCGTGTGGAGCTGGATACCCACGGCTGCGCTTTGCGCTGCTCCGCCCTCACGGACCCCTCTCAGGACTCACAGTTCATTGTAGCAGGAGATgactgtgtgtatctgtaccAGCCTGATGAAAGAGGACCCTGCTTTGCCTTTGAAGGACATAAAATCCTGGCGCACTGGCACCGGGGTTACTTACTACTGATTTCCCGAGACATCAAGTCACCTAACAAGCCTGACTTTGGGGCTAGACAGTTGTCTCCAACAGAAAAGCAGGTCTTAACGATTTATGACCTGGACAATAAGTTCATCGCCTACAGTGCAGCATTTGATGACATTATAGACGTCCTGGCAGAGTGGGGCTCGTTTTACATCCTGACAAGAGATGGACAGATGTTTATGCTGCAAGAGAAGGACACCCAGACTAAGCTAGAGATGCTGTTTAAGAAGAATTTGTTTGTGATGGCAATTAACCTTGCAAAGAGCCAGCATCTGGATAATGATGGTCTTTCTGAGATATTTAGACAGTATGGAGACCACCTGTATATCAAAGGGGACCATGACGGAGCTATCCAACAGTATATTCGAACCATTGGGAAACTGGAACCCTCATATGTCATCCGTAAGTTCCTGGATGCTCAGAGAATACACAACCTTACTGCATACCTGCAGGCCCTCCACAGGCAATCCCTGGCCAACGCAGATCACACCACGCTGCTCCTCAACTGCTACACCAAACTGAAGGACAGCTCCAAGCTGGAGGAGTTCATTAAGAGCAGCGAGAGCGAGGTGCATTTTGATGTGGAGATAGCCATAAAGGTGCTGCGCCAGGCTGGATACCATAGCCACGCTGTGTTCCTGGCAGAGAAACACTCCCACCATGAATGGTACCTGAAAATTCAGCTGGAGGATTTAAAGAACTACCAGGAGGCTCTGCGCTATATTGGGCGGCTGCCATTTGAACAGGCTGAGACTAATATGAAGCACTATGGGAAAACTCTGATGCACCATGTTCCTGAGAGCACCACTGTGCTGCTCAAGAGGCTTTGTACCAATTACCAACCTATCCAGGACTCCACTGACCGGGACAGTGTCGACAAATTAGCAGTGAACAAGGCCAGTTCAGAAGAATTTATCCCTATCTTTGCTAATAATCCACGAGAGCTACGAGCATTCCTTGAGCACATGATTAAAGTGGAACCATTTTCACCACAAGGTGTGTATGATACACTGCTTGAGCTTCGGCTGCAGGACTGGGCTCATGAAGAGGATCCTGAGAAAAAGACAGACCTGCAGGAGGCAGCATTGTCACTGCTGAAGAGCGAAAACACAGTGTTTGATAAAGCTCTGGTTCTCTGCCAAATGCACAACTTTAAAGAGGGAGTGCTCTACCTGTATGAGAAGGGCAAACTGTACCAGCAGATCATGCACTACCACATGCAGAATGAGGAGTACTCTAAAGTGGTGGAGGCTTGTAAGCGCTTTGGTGATCAGGAAGTTTGTCTGTGGGAACAGGCCTTGGGCTACTTTGCACGCAAAGAAGAAGACTGCAAGGCGTACATTAGTGAAGTCTTACAACACATAGATCAGAATAACCTTATGCCACCACTGCTGGTGGTACAGACACTTGCCCATAACTCCACCGCAACGCTGTCAGTGATTAAAGATTATCTGATTAACAAACTGCAAAGGGAGAGCAAGCAGATTGAAGAAGATGAGAGGAAGATTCAGCAGTACCGTGAGGAGACTGCACATCTACGCTCTGAGATCCAGGAACTCAGCACCAGtgCAAAGATTTTCCAGAAGACAAAGTGCAGCATGTGTAATAGCCCTCTAGAGTTGCCATCAGTGCATTTCCTTTGTGGTCACTCTTTCCACCAGCACTGCTTCGAGAGCTATGCAGAGAGTGAGGCTGAGTGCCCAACATGCACTcctgaaaacagaaaagtgaTGGACATGTTACGGGCGCAGGAGCAGAAACGAGATCTACATGATCACTTTAATAGACAGTTGAGGAGTTCTAACGATGGCTTCTCTGTGGTGGCGGATTACTTTGGCCGTGGAGTTTTCAATAAACTGACTCTGATAACAGATCCTCCTGGGGGCAAGGCTGGGTCTGGGGGTTTAGAAGCTGATCTCCAGAGAGACCTACTCATTCATACCAAAAGAAATGCCTGAAAATCACATTAAGTATCAAATTGGAAGACTATGGTCATGCCCTAATGAATATGACTGAATTATAGGGCAAAGATTAGTTATTACTACATCCTGTTCTCCTACTCTTGTTCAAGGTTCCTGTTTTGCAGATGTGGACCTTCTGGAAATTCAGGCCCAAACTGATGCAGACCACCTCTAATAGTCAACTTAATATAGCTTATGAGCAAATCAATTGAAAATACAGCTGCTTGCAACCCCACACTGGGGTAAGCAACCTTTTTGTCTGTAAATGCACTGTGAATAGCAAAACTTCTGAACGTGTTGCTTTTCTTGTATGCTTGTCATCTGCAGTATATAATGATTAATACATATTTGGTATGTAGCCTGTGAATTTGTTGATGCTCATAATTACAAACTACCTTTCAGCAGCCACTGTTTGCACTCAACTTAATGAATACATGTTCAAATTTCTGGCATTAAATAAAAGGCGGTGAAGCACA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048794 swim bladder development biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0003407 neural retina development biological_process
GO:1902362 melanocyte apoptotic process biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0001889 liver development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20179 VPS11, PEP5; vacuolar protein sorting-associated protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318179 lncRNA upstream 2950 13521152 ~ 13526385 (+) True G268587
TU318168 lncRNA upstream 53837 13432734 ~ 13475498 (+) False G268580
XR_004579829.1 lncRNA downstream 319904 13859796 ~ 13863635 (+) True LOC117599363
XR_004579837.1 lncRNA downstream 402793 13942685 ~ 13947023 (+) True LOC117599376
TU318956 lncRNA downstream 1015594 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 1057072 14596964 ~ 14597818 (+) True G269268
XR_004579796.1 lncRNA downstream 1058715 14598607 ~ 14604363 (+) True LOC117599336
XM_026941802.2 mRNA upstream 23785 13504657 ~ 13505550 (+) True LOC113543522
XM_026941800.2 mRNA upstream 25948 13494721 ~ 13503387 (+) True zpr1
XM_026941950.2 mRNA upstream 36218 13491329 ~ 13493117 (+) True pwp1
XM_026942053.2 mRNA upstream 78542 13448733 ~ 13450793 (+) True bsx
XM_026942051.2 mRNA upstream 498655 12897193 ~ 13030680 (+) True opcml
XM_026941925.2 mRNA downstream 670 13540562 ~ 13547225 (+) True ift46
XM_026941997.2 mRNA downstream 7445 13547337 ~ 13550191 (+) True LOC113543629
XM_026941670.2 mRNA downstream 242455 13782347 ~ 13784904 (+) False tmem126a
XM_026941671.2 mRNA downstream 242466 13782358 ~ 13784904 (+) True tmem126a
XM_026941927.2 mRNA downstream 271814 13811706 ~ 13822838 (+) True arrb2a
XR_004579830.1 other upstream 213119 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 2958630 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 3774745 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4104480 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 1222421 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 3085017 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 3085508 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 3085590 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 3086081 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile