RNA id: XM_026942067.2


Basic Information

Item Value
RNA id XM_026942067.2
length 1513
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC113543669
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16591893 ~ 16594397 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTACACTATACtacgctacactacactacactacaaacACCCATACACACAGTCCAACATGGAAAATGTGGTTGGGTTAACTTTGTTCCTCTGTCTAATCGGTCGTTTGGTTAATCAGTTTATATCGACCGAGATCAGACTCATCAGAAAAAGGAGATTAAGGATTAGGGACTTGATTCTGAATACACACAGCAGGTTACGACGCCAAAGACGAAGACAAAGACAAATCCAGCTGTATTACCAGTTACGTCGCAGGCCGCCTTCTGTTTGGGTCCGTCAAAGAGCAAACGATTGGTGGACTGTTGTAGTTCCCAACTTTACAGATGAGCAGTGGAGCCAGAATTTCAGAATGTCTGAAGACACATTCCTGTACCTTTGCCATAGGTTGCGCACAGCAATGGAGAAGCGGGACACCAACTTTCGTCTATGCGTGCCCATAAAGAAACGGGTAGCCATAGCACTATGGAAGCTGACCACCAACAGTGAGTTAAGACTCGTTTCACATTTGTTTGGCGTTGGTGTTACTACGGTGTGGCGATGCCTTCGGGAATTCTGCACAGCAGTTAATGAAGTACTACTGCCAGAACTGATACCATTCCCAAATGATGATAAGCTTATGGAAATGGCCATGAACTTTGAGCAGAGATATGGACTTCCACAGTGTGTTGGGGTTGTCGCTGGATCACATATCCCAAATGTCCCCACAGAGTACCATGCCGAGTATTTTAACCACATGGGCTGGCATTCTATTATACTGCAAGGAGTTGTGGATGGAAATGGGCTCTTCTGGCATGTATTTGCAGGAAGTCCTGGCAGTATGCATGACGCTACAGTTCTGCATGTGTCAGGGTTGTGGGATCTCATAGGACAAGGACTATTTCCAAACCATACCAAAAATATTGCTGGTCATGATGTTGGCTACTACCTCCTTGGTAACGCTGCATTTCCATTGCAGAGCTGGCTCATGAAACCATTCTCAGACACTGGGCAGCTGACAGCGGAACAGAGGGCATACAACCAGAAAATCTACCGAGCAAGTTGTGTGGCTGAAAAGGCATTCAGTCGGCTGAAGGGACGATGGAGATGCCTTCTTAAACGCAATGACAGCCACATAGACCTTGTGAAAACAATGGTGCTCACCTGTTGTGTCCTCCACAACTTATGTGAAACACACGGGGAGCAGTACAGCGAGGAATGGGACCCTCCTGCTGCAGGAGACCAGATTTTAGTGGCACTCCCACCAGAGGAAGACGCTGACGGTGCAGCCGTGGGTGTGCGCAATGCCCTGGTGCATTATCTAAACACAGACAATAGTGCTTCATCGTTGACTGAGTAAAGTATATAAACAACAGCTGTGTCTGGCTTTATATCTATTACGTAGATATCTGAATACCAAAGAAGTAAAGCACTGAAATtcttaggggtgtaatgatacactcCAGTCATTATTTGATTCACTATCTGATTTTCAGAAAATTTAGGCAAactttgaatgaagaaaaattatgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320506 lncRNA upstream 14653 16576363 ~ 16577240 (+) True G270536
TU320489 lncRNA upstream 81146 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 205961 16385030 ~ 16385932 (+) True G270520
TU320453 lncRNA upstream 240434 16351248 ~ 16351459 (+) True G270495
TU320399 lncRNA upstream 263121 16328511 ~ 16328772 (+) True G270449
TU320608 lncRNA downstream 31587 16625984 ~ 16626358 (+) True G270626
TU320717 lncRNA downstream 203448 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 466584 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 492998 17087395 ~ 17087922 (+) True G270856
TU320889 lncRNA downstream 504744 17099141 ~ 17101046 (+) False si:ch73-234b20.5
XM_026941609.2 mRNA upstream 1899 16583036 ~ 16589994 (+) True reep5
XM_026941568.2 mRNA upstream 39375 16538769 ~ 16552518 (+) True zgc:114200
XM_026941909.2 mRNA upstream 56950 16518234 ~ 16534943 (+) True tpm2
XM_026941908.2 mRNA upstream 56950 16518237 ~ 16534943 (+) False tpm2
XM_026941911.2 mRNA upstream 61674 16518230 ~ 16530219 (+) False tpm2
XM_026941747.2 mRNA downstream 75920 16670317 ~ 16744667 (+) False pam
XM_026941750.2 mRNA downstream 75920 16670317 ~ 16744667 (+) False pam
XM_034312523.1 mRNA downstream 75932 16670329 ~ 16744667 (+) True pam
XM_026941748.2 mRNA downstream 80071 16674468 ~ 16744667 (+) False pam
XM_034312484.1 mRNA downstream 154523 16748920 ~ 16787635 (+) False ppip5k2
XR_004579771.1 other upstream 1820820 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3275677 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 6021188 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6837303 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 7167038 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 30512 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 31003 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 31085 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 31576 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 31658 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile