RNA id: XM_026942071.2


Basic Information

Item Value
RNA id XM_026942071.2
length 4486
RNA type mRNA
GC content 0.46
exon number 2
gene id si:dkey-175g6.2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13884461 ~ 13889981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGATGGAAAGCGCCTAGCTGAAGGGCCGTCACTGGGCTAATGCTGAGTGGCAGTCGATAATGCCAAGGCGGATCACACTCTGCCCTCTGGCCCCTAACCACTGACAGCCCAGGTAGAAACACACGAGCTTTACTCCGTTTGGAGCTAATAATATATGGATTTAGAGCCTAACACGTGTTAAAACGTGTCCTCTTTCAAAACCACAAACGGTCAGAATTAAAGCGCGTgggtttgtttttcagtttgtttggAACTGGTTTGAATGTGTCAAGATATACTAGATATACTCGTTAGACCGAAGGCCCTGTTTGTGTCATGGAGTTGATTAGTGGTTCAGGAACATGTCGTGACGCATCCAGCATTTTCAGAAATTGTTGAAATGAGATTTTCCCATTGTGCGAAGGCGCTGCCACTTCCAATGAGACTCGCGGGACTTCAATATGCGCAGTGCGACTAATTCAATTACACCAACCATAAACTGTGATTGGCGGGTTTGTGGTGGGTCAAGACTCCGCCAGAGTATTTTAGCAATTAGGCCTTATTCCTAAAGAGGATGAATATTTGAGTTATAACCACGTGAGTAAAGGCTGCTGCAGAGCATCTTCATATAATTTAATGGATTGCATCCCAGTGAGTCCTATTTTAAGGATCATgtgtatgtaaaaataattgaaCCAAAAATGCACGTAATTCCCACAAATGATAGCCTCTAAATAGGGACAGAATGAGAGGATGACGCGCGAGCCAGATGGATGAAATTCGGCGACGGGCGCGAGAGACAAAGACTGGCAAATTGGAGGTGCTCGGGAAATGGAGCGGAAATGGAGCGGCGGAGCGGAGCCGCGTGCGTCACGGCGGCCTCAGTCGCTTGGCTTGGGTCCAGGTCCGATTAACGGGCAACTCAGTCCCTACACATACCAGACCGAAGGGGGGAAAACTAGTGTTTTTAAAAGGGGGATACCGGACGCCGCCAGAAGAGCTGCGTCTGTGCACCAAACAGGagtttcactttatttaaactCTTCAATTAGCCTCCCAATTAAATAGGCCCACGCATAATTTATCATCATTCTGCTTCCGAACGCACGCCACTTAATGAATAAAAGGGAATTTGAGAAGTTCGTTTAAGCGAGAATATGTTTCTGATTTCCAAGCACGGTGCTCTCCGTTCTTAATGGAGAGAGTTGCTTCATTCATGCCGTTTCCGTTCATTCATCAGAGCAGCGTAACGTACCCTCTGAGTTCAAACGAGACACGAAATTCTTATCAATGAAGGGGGTGACGTCAAAGGCGGCGCGCGCTGACTCGTCGGTCACGTGGCCCCACGCGCCTGTACTTATCGGCGCTGAGCTGTCCGCGgtcctgataaaaaaaaatcacgcgCCACACTGACGTACAACAACCAATAACAGCTTTCACATGTGCAAATAAGAGTGAATCGTAAACGAAGATCAGTCTGGGCCTggaaaagaaacttttttttttcttagtttcgAATTAAATAAGGACTGAGATCTTCGAGCTTCATTCGTCAGACACGCACAGGAGGCACAGGAGCGCTTCTGAGTTGCAGCTGAATTTTGTGTGGGATCGCAGGTGCTCACCCCGTCCCCTCTCCCCCAGCCCCATCTGGTCTGCTCTGCAAGGACATGACCTGCTGCCATCCTCCCTCCTCTACTCTCCTGTTAGTCCTGCTCAGCATTGCTCCACAGCTACCTGCTGCTGCCCCACTGCTTACTGAAAGCCCTCTCACGGGCACCAGCAATGAGACACTCTGGCTGGTGCACCCAGAACCAGCCACAGCAGCTGGAGCGGTCAGGACACACAGGAAAGTGGAAGGCATCCTCCAGACTCCTCTGGGACAGGGCCGCTTTACAGACATAGACTCTGCCAGGGCGCTGGTGTCTGTCTTGTTAGAGGCTCTTGATCATCCAGCTAGAGAAGAGAAGGGAAACCTGGTAGAGACAGAGGAGTACATGAAGAAGGAGCCATGGAAGGAGCTGGAGATGTGGAGTGATCAGGAGGACCACAGAAAACCTGAACAAGGCATAGGTGAGGAGGAGAATATGGAGATACCCCAGTCTGGAGTGACTGAGGCAGTGCAAGGAGTGGAGAatggaggagaagaaaaggTAGGACTAACAGATCCAAGGGTTTCAGATGAGGAGGACGAGAATGGAAATGGTGAAAACAAGTTTGAGGAAAAGGAAGGGCTTCTGCAGAGTTTGCTCAGTAAGAAAGCAGCGGTCccagcccaaatcatcacctcGCTACAGCGTAAAACCAGGGGCTATTTTCAAAACATTGACCTTGGTCTCCAGGACAATGAGATCCTCCCACCTCTGAAGGGCTACAAAGCTTATAACCAGCAGCTGGCTTTGGCCAGCAAGAAGCTCAAGtggcaggaagagagagagaaaaacccCTCCCAGCTCGACAGAAACTTCATGGATGATTTTGACTTCatagaagaggaggaggaggtccTTCCACGCGAGGAAGAGGAGGCAAGAGCACGAGCTGAGCAGGAAGAGGTGCGGAGACAGGAGGCAGAGGCACAAGAGGCGAGAGAGGAGGAGCAGAGACTTGCAGACATCGCCTCTGACATGCTTCTGGAATACATGGGgaggaaacaaaaaacagccaCTTATATGAAAGACAGGAAGAATGCTTTATTGCTCAACAATGTGGCTGAGGACAAGCGGTCTAATGAAGTGGaggacagtgatgatgatgaaatggACCCAGAGACAATTGACAAGCTGATCGAAATCTCTAGTAAACTGCACCTACCTGCTGATGATGTAGTTGAGATCATTACAGAtgtggaggagaagaagaagaggaaggacCCACCCCCCAGCAATGCCCCTCGTTTCCGGCCTTTAGTCCCACTCAAAGCCAAACAAAGGGCTCCCCTTTATCAATACCCTAAGACCCCAAAGAAATCCTCTTACAAGATGAACCCATATAAAAAGTGGTACAAGGAGAAAAGTAAATCCAAGTTCCACAAGCAGGACTACTGGTTTAAGCCAGAGAAGCAGTTACTAGCATATCCTTCCTTTCCCTACTATCAGAAGCCATATCGAGCCTATTATCCTGTCTATTTTCCATCTCCTAAACCACGCTTCTACACAAATCCTGCACTCTCCTTTGACTACAACTTTGGGGACCCCATTGGTTATGGCTTCAAGCCTCCCAAACGTAGGTACAAAGACAGAGCCAAGGGGAGGGAGCGAAACTGGGTGCAAGGGGCCCGCCGGCCCCAAAACATCTACCCTTTAGCAGACACAGTCATTTCTAACTACATCCTTCCTCATCCCCGAACTTACCAGACGCTCCCCGTGCCCAAAGCCCGCTCTCCTCCAAGTGCAGTGGCACCTGGCTATTATTACCATCCAGACTATGCTTATGATGAGCCAGAGCCTGTGCCAGATAGTGACGATGAGCTGGAGAACTTCATTGAGAAGATTTACTACAATCGAAGGTTATTCTAGATAGTTCTCTATCTGTGGGAAAGACCTGTGATAAACCATAGCGATGAAAAAAGAGTGAGgagaacaaagagaaaaatggagaaagtgAGGGAGTGAGGTTAAGGGCTGAGGAAAGACTAATTCTATGTTACTTCTCCActcttgttttttaaaacattccAGGTTAGGCCAGAAAAGCGATGATAATGAGGTACTGGACCctctttgtgtgtttgcattctGTTCCTCTCGcagtttacattttcatttggtgAGAGAACTTACGGGTGAATTTGACAGGCTTCATTCAGGTATGGTTTTACTCTTGCATGTCAAAACATTTTAGGTGCCAATTGCAAGAGACCCATGTTTACACAAAGATTACTTTTAATGCTTGATTAAttaagtgattttaaaaaagggtCTCAGCTTGGGGCTGAATTCTTGACTCACTAGTGAAATTATTACTGACCCATCTTTTTCATAGGCCATGTTTAGTTGTTATCAGTAGTCTTTTTGTCTTAATATGGCTCTATTTAATTCATGTGCATGCAGGTCTTGCACCCTTGAAACTAATAACTTTatgtgaaacaaaaacaaatatccACCACAAACTTGAAAGCAAATCTTccattctgtttaaataaatgcaaaatggtGGGTGTCTTTAATGGATGGATGTCCTGTGACGGTAGTTTTTTCAGTATTCTTTCACCTTGCCAATGATTTACTCAATGCCtcacataaacatttttaaaacgcCTTTATTACAATTTATGGGTTGGTTCTAGCATTCTATCAACACATTGTATCTTTGTCTTGAGGGTCAGAAGAAAGCTGTATATATTATGTCTATTCAAAAGAAGTTTTAAAACACTTGAAAAGTCTTGAGAAATGAACTGAGGTTGAAACTTCTGCACGTCTATCTGTATTtgcatcttaaaaaaaacagaaaaaaatatgggGGAACTTGCCTCTTTGAAAAACtgtggttatttaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579829.1 lncRNA upstream 20826 13859796 ~ 13863635 (+) True LOC117599363
TU318179 lncRNA upstream 358076 13521152 ~ 13526385 (+) True G268587
TU318169 lncRNA upstream 408963 13432734 ~ 13475498 (+) False G268580
XR_004579837.1 lncRNA downstream 52704 13942685 ~ 13947023 (+) True LOC117599376
TU318956 lncRNA downstream 665505 14555486 ~ 14556349 (+) True G269251
TU318977 lncRNA downstream 706983 14596964 ~ 14597818 (+) True G269268
XR_004579796.1 lncRNA downstream 708626 14598607 ~ 14604363 (+) True LOC117599336
TU319137 lncRNA downstream 892980 14782961 ~ 14783685 (+) True G269393
XM_026941974.2 mRNA upstream 46382 13833427 ~ 13838079 (+) True c17h17orf49
XM_026941975.2 mRNA upstream 53265 13826792 ~ 13831196 (+) True med11
XM_026941927.2 mRNA upstream 61623 13811706 ~ 13822838 (+) True arrb2a
XM_026941928.2 mRNA upstream 61623 13811706 ~ 13822838 (+) False arrb2a
XM_026941670.2 mRNA upstream 99557 13782347 ~ 13784904 (+) False tmem126a
XM_026941712.2 mRNA downstream 9583 13899564 ~ 13904855 (+) True slc25a1a
XM_034312338.1 mRNA downstream 24027 13914008 ~ 13939043 (+) True ltn1
XM_034312339.1 mRNA downstream 24027 13914008 ~ 13934384 (+) False ltn1
XM_026941818.2 mRNA downstream 744510 14634491 ~ 14654548 (+) True paxbp1
XM_026941773.2 mRNA downstream 766981 14656962 ~ 14673374 (+) True slc7a1a
XR_004579830.1 other upstream 568245 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 3313756 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 4129871 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 4459606 9419665 ~ 9424855 (+) True LOC113543674
XR_004579771.1 other downstream 872332 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 2734928 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 2735419 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 2735501 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 2735992 16625973 ~ 16626045 (+) True trnar-ccu_9

Expression Profile