RNA id: XM_026942462.2


Basic Information

Item Value
RNA id XM_026942462.2
length 4839
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113543930
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19649463 ~ 19665324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTGCCACGGCTTTCATATTGTACCACCATTTTCATATTGATCATCATtgagataaagagaaaagacagaagacGAAAGACAGAAGACGAAAGACAGAAGTTGTTTAGATGAGGTATTTGCATATCAACCCAATTTTGGTTCTGTTTCGCAAGCATGAAGAGCGACAgttcatgttttatgtttacacacacacacacacacacacacacacacacacacacacacacacatgcacacccacTCATCTAACTACAAACACTTATTTTAGATACTCAACCCACAGGAAGTGAATTTAacaaggtcacacacacacacacacacacacatatgcacacacagacacacatgaagtattatatgtattttcacactcacacaccatagCCACAAACTTCTGCAAACCagttcatcagaaaaaaaaaaaaaaagagaacacgACAAAAGGAATGAAGACACAGAAGCCAAAAGAAGACATTGCCGGGGAGAGAAGAAGACAAACAAAGTcagacaaagtgagagagaggaaaacatAAATAGAAGAGGAAAGACAGATACGATAGAGAGATAAAAGCAGAGAgcgagaaacagaaaaagacaggAAGACGCAGAGACTGTTGGACTGATGAATGATGGAGGGAGAAGTCAGAAAGAAAGGGATGCTCTATCAACAGCAGCAGCGCTTTGGCAAGaaatgGAAGAAGGTATGGGCTGAAGCCGTAGCCAACAGCACACACAGCCTCTCCTGTCTGGAGCTCTTCGAGTTCAGCAAGTCCTCATTGAAGGAGAATAAAAAACGTGCCGAGGGTAAGAAGGTGATCGTGATGAGAGACTGCATCAAgataacagagagagaagctgagGGATGTCCAAAAGAATGCAGCACCTTCCTGCTTGAAACTGCAGACAGGACATACACATTCGCCTCTCCAACCTCAGAGCTACAGAGTTGGATCAAGGAGCTGTGCAATCTGGCATTTCCTTTGAATCAGGCTGAGTGTAGATCACAGAAGCAGGATCATCCTCAACCTGTAGAGATGCAGGAGAACACTCTTTATGGGACCACTGAGAGtgTTCGGGATTTCCTGGTAATTGCTGTGTCGACGGAGGCAACATTACGCTGTAAGCTGTATGGAGAATACTTTCTCACACCACAACATGACTCGTTACTCCTAAAGAACCACAAAACAAAGCAGGTTCTCCTCACATGGCCTTATCGCTTCGTCAGGAAATTTGGTCAAGACATGCTGTCTTTTAACTTCGAAGCAGGTCGCAGGTGTGAGTCTGGCGAAGGCTACTTTGAATTCGCCACGAGTCATAGTGATCGTCTCTTCACAATCATCAGTGATGCTCTCAAGAAACTTCCAAAGATGGAAACATCCGGAACAAGACCCAAAGAGCAGCAGATTCCCCAGAATTCCCAGCAATCCCACACACCTCCGGCACAGACGAAGCATCCGAAGAAAAAACTGACCACAAGCTTTTCGCTGAACTCCATCAACTTGAGTGATATTCCCAGCAAAGACAGCCAAGTGAAGAGCATCGACAGCACTCCTCCTCTCTCGAGTAACGTCCAAGATCCAGTTTATGCTATGATTACCAGACCAAAATTACACATGAAGAGCACCAAGGATTACCAACAGTTTGGCCCACTTCCTGATTTTGTCACCCTCTCTGAGGACATTTCCGGTGTCCTAGAAGAGGAAGATCAGATGAACCCAGAGCAATTAGCCATCCATACTAAATTTAAGGACTACGAAGATGAAACAGTCTACTCAGAAGTGAAAAATTTTGATGATTATGGGAGCAAGAATGAAACTGTTGACAACACAGTAGACGCGTATTTCTACGAACCTCAATCCCACAATCTAACTGTCTGCTCAGACCTCAAAGACTCTCGTGCTGTAGGTTTCAACAAAGACTATAAGAACCAACAATTTGTTCCACAGTCTAATTTCCTAAAGCTTTCTAAGGACATATCCTGCATCAAAGGCGAAGAAGAGCAGCTGGACATGTCAATGGAGCGGTTAGCCATCCATCATACACCTAATGTCTATGGAGCAGAAGGCATGTACTCACAAGGAACGGATTGTTATGATGATTATGGGAACAATGAGGAATTTGTGGACAATGTAGAAGATCTTGAATATTTCTACCCACCTCCTGCATCtgacacacacttcagaaaTAGCCCCTCCAACCTTGAGGACTCTCAAGCTGACGGATTTTCCACCTATGATAATTTACCCAAAAGACTATAATCTACTCTGCGATTGTTTTGTGTTGGTCCTTTAAAAATTCTAtaaatttttatgcattttctaTGTCTACAGACAAGTGATAAAACTGccccccacagcataacagatcCATTGAACCCCCTACTGTAGGACTCAAACATTCAGGCCTGAACTGTTCTGTTGGTCTGTGTGACAGATTCACTCATCCACTTGTCAAGAATATGGCAAAAGATGTCTTATGTGACCATATCACTTTCACATCTCTGTAGACCCAGGACTGTGGTTTTAAAGTTCCACTAAAGAACACTGAAAACTAATTTGCTGTAGAGTGCTTTTTTTCACCTCTAGAACTTTGAGATGGTTGGCTCTAGTTCCCTGATGATCAAATTAGCAATCAGAGTTCTGGCGAGTGCTATTCAGCATCGATTATTGACTTCACAACCTTCGTCATTGGTTACACTGATGATGACTGAAGATCAGTTCCATCTCTAAAGCCATGATGATCCCCACCAGAGGCCTGGTCTATTGATGGTGGCAGAGTGCTGGTGATCTCCTTTTCTTGACTTCTTCTTGACTGACTCTTGATTTGTGACGATGGATTCCAGAGTCTTGGTTATTGCCCACACAGCCCTGATGATCATCTCCAAGTCTTTGATGATTGGTTACATGTCCAGATCCTCAGTGACGGGCTGGAGAGTTAATGGTGGGATTAATGATGATTGCTCCAAAGCTCTGATGATTGGCTCCAGAACACTGACAATCTGTTCCAGACCACTGACAAGTGACATGGCAGTAGCGGCCTAATGATTGACTCTAGAACCCTGTGCATCGATCACAGAGTTTTCATAATCACTTTGTGAGCCCTAATGATGGGCTCCAGAGTGCTGATCATTGGCACTACAGAACCTTGATCATCAGTTACAGTGCAGTCTAGATATTCAGGTTTCGATAATGAGTTTTGATGCTCATTTCCAGATCCATAATGAACCAGACAATTGATTATTGACTACACTGATCAGCAATTCCAGAACACTGATGATCAAAACTAAGGGGCTGAGGATCAAATCCAGAGTTTTGAAGATCATCTCCAGATCCATGATGATTAGTTTCAGAGTGTTGGTAATTTGCCTGATAGATTAGACTGGCAGTGGAGTGATAATAATTGAGCTGAAAACAGGACACATTACAAGTTCAGATTTGTGCACAATAATTTCAAAACAATTTGGAAGTGTACTCATATATATGgtttatcatcatcatttctcttctcacTATTAAGTCATGTAACAACTTTGGCTCATTGTTTCATCTTTATCACATTCCAACTAATGTACATGTGAGGGGCTTTTTATCAGGTAGTTTCTCTGTTCCATAGCtagtttaaacaataaaaaaaatcaggtataAGGTTGATCTGTTGATcttttctaaaatgaaaatatcaacCATGCCATTTTTAAAAGGCCTAAGAGTTTGCTTTCAGAATATTAACATGCACTTTATTGTGCAACCTGTAGAGGGCAATATCTCTCTCCTGATGCATTATGGAGCAATAAGTTGTGAAGTAATTCTGAATACTGAATGGTGCATTTAGGGACTAAATTACCGAAGAATGATGCATTAGACACGATTCAGCAGAGACACAGACCACGCAGAGTGGCTGTTATTTTTGTGAGTTGCTCATAAATGGCACTTTCcaatagtaataaaatatataaaaggtaTGATTTGGTTACTCATGTATATATAACATACATAAATTCTATTTGAACAAGGTTGAGGTTCTTATTTCAGTATAAGCTGCTGTATatcataaaaacaaatcaaattattATAATGCAGGCTTTTATGGTAGCACCAGCATATTTACACAATGTATTTTGCAAGATACAAAAAGCAAAAGCGTAGGATAAAGACAGTAAGTAAGTAGAAGAAGAGATACAGCAGGTGTATATTTATACAGGACTGTTCCAATGACAGATTTGAGTGTTTAAATGCTCTTGACACCAGTTACACTGGGTATGGAGACTGCATCATATACTGAGTTGactttactgttattttaacGTATAGTATTTCCTAATGCAAAGTTGTAAAATCCCAAAACCCAAATATGGAAGTGGGTTTAAAGCATTTTCTATTTGAGTATTAACTCTGTAAAATGATGTACAGTACCAGGAACTGTATTGCAATTAAAATAAGAGAAGCCCTTGTTATAGACTTGAGTAATCTGAGTTTTTCTTCTTGTCAGTTTCAAGATTAACTCATGACCCAGAATAAGTGCAGTACTTTTATTGGGATAATACTGATACATAAAGAAACTTCTTTGGCAAATGCTGTGAAATTTGGCCATGGCCTAGATGGCAAATAAGCTAAAGATACCAAGACCGTTTTGTCACCGGTAAGAAAGTGGACACAGGGTATGTTATTTTCTCTAGCTCTCCATCAGCAAGCACACTGAAAGGCTGAGGACGGTTGGTGTTGTCCTTGAATGTTTCACTGGGGGCTTTGAAAAGAAGACGTCCCCAGTAAACATCATTCCAACATATTTCAAAAGGGATCTGCTCAATGATCTTTATTAAAAGGCTACCTAATGGGCA

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0006935 chemotaxis biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0042330 taxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04611 Platelet activation
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322223 lncRNA upstream 152597 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 154588 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 164559 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 313583 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 420040 19229061 ~ 19229423 (+) True G271853
XR_004579783.1 lncRNA downstream 151854 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 153143 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 257711 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 275722 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 300803 19966127 ~ 20008197 (+) True G272246
XM_034312298.1 mRNA upstream 100269 19540378 ~ 19549194 (+) True LOC113544003
XM_034312834.1 mRNA upstream 109187 19530877 ~ 19540276 (+) True LOC117599386
XM_034312833.1 mRNA upstream 128686 19489206 ~ 19520777 (+) True LOC113544004
XM_034312832.1 mRNA upstream 160369 19485272 ~ 19489094 (+) True LOC117599385
XM_034312831.1 mRNA upstream 181241 19449805 ~ 19468222 (+) True LOC117599384
XM_026942526.2 mRNA downstream 118000 19783324 ~ 19786831 (+) False LOC113543969
XM_034312420.1 mRNA downstream 127380 19792704 ~ 19805795 (+) True LOC117595711
XM_034312380.1 mRNA downstream 160784 19826108 ~ 19830268 (+) True LOC117599326
XM_026942865.2 mRNA downstream 188230 19853554 ~ 19943505 (+) True gfra2b
XM_026942564.2 mRNA downstream 353042 20018366 ~ 20023714 (+) True LOC113543999
XR_004579823.1 other upstream 240045 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 244536 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 405558 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 712493 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 713475 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 117103 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 117103 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 117256 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 128588 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 128588 19793912 ~ 19805795 (+) False G272180

Expression Profile