RNA id: XM_026942472.2


Basic Information

Item Value
RNA id XM_026942472.2
length 1405
RNA type mRNA
GC content 0.48
exon number 8
gene id plpp5
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18900339 ~ 18906189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTAACCACCTGCAGGTGGCGTGAGAACTGTGTGACGTGTAAAcgtgtctcttctctctctctgtgccagCCTGCACTCTCCTCACCAGGAGAGGGAGAGGATCCGCATCTTCACGCATCAGCCACTTTGGACATGAAGGATCTGTTTACTTATACATGACGGGCCTCACCAAACCCGTCTCGCGCGGCTGCTTCCGGTGTAAGACGGGCTGAAAAAAGGAGCGAATCATAAAGGTGAAGCAAGCGACTGGGACACACCAGATCCAAAGATGAGGAAGAGTATAGACCAGGAGTTCATCGCTGAAGTGGTCATCcgcctgctgctgctggctgTCTTTTTAGTGACTGAGCAACTGGCTCCGTTTACCCGACAGATCCAGCCTGAGGAAATCTGGCTTTACAGGTTCCACCATGTGAAGAATGACCACATTCCTACCTCACTCATGTTTAGCATTGCTCTCTTTACACCACTGGCCACCATTCTGTTTTTTGCATTCCTGAGAAGAACTGAAAAAGGGGAGATTAAGGAGGCTTCGTTAGCTGTGACCTTGACTCTGCTCCTGAACGGAGTTTTCACCAATGCTGTAAAGCTCACTGTGGGAAGgCCACGTCCAGATTTCTTCTACCGCTGCTTTCCAGATGGTCAGATGAACCCAGAGTTTCAGTGCAGCGGCGACCCAGAAATGGTCACGGAGGGGAGGAAGAGTTTCCCCAGCGGACACTCATCGTTTGCATTTGCCGGACTGGGCTTTACGGCACTTTTCATAGCTGGGAAGCTTCACTGTTTCAGTCCAGCTGGTCGGGGAAAAGCATGgcgtctgtgtgtgttcctcacacCTCTACTCTGTGCTGTTTTGATCGCTGTCTCCAGAACTTGTGACTACAAACATCACTGGCAAGATGTGTTAGTGGGATCACTGCTGGGTTTGACCTTCTCGTACCTTTGTTACAGACAACATTATCCATCACTCACCGAGTCCGATTCCCATAAACCCCTGAGGATCAGAGACACAACACCCTCAGCACAGGAACGCAAACAAGCCACTGCAGGATTCCTTTTGCCTCTGTAGGGATGCCAGTAGCACTTAAACTACTCCTGAAATGTGTGATGGACATGTTCTCATGCACAGCCCTTAAGCTAATGCTGccaatatgtgtatatgtgagtgtgagtgcgaGACCTAGGAGTCTCTGTTTCCATTTGGCCTTCTTAAGaacatatatacattaaaaaaaaaagaaagaaagaaatactttGTGTATTGTAGATATTTGGATTTGTATTGGACCATGAACAGCCTGGGGTTTCTGCATCAGGTTTCGAATATCTGTTTGAATATCATGTATGTCTCTCgttcactgtgtttataatGGGGTCTatcaataaaatgtttgtaaagtTTG

Function

GO: NA

KEGG:

id description
K18693 DPP1, DPPL, PLPP4_5; diacylglycerol diphosphate phosphatase / phosphatidate phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579801.1 lncRNA upstream 473149 18426072 ~ 18427190 (+) True LOC117599343
TU321496 lncRNA upstream 551955 18298122 ~ 18348384 (+) True G271340
TU321384 lncRNA upstream 774547 18125611 ~ 18125792 (+) False G271235
TU321386 lncRNA upstream 774663 18124822 ~ 18125676 (+) True G271235
TU321218 lncRNA upstream 1126959 17769769 ~ 17773380 (+) True G271104
TU321758 lncRNA downstream 7068 18913257 ~ 18913627 (+) True G271542
TU321760 lncRNA downstream 11820 18918009 ~ 18918576 (+) True G271544
TU321761 lncRNA downstream 12405 18918594 ~ 18919467 (+) True G271545
TU321764 lncRNA downstream 17175 18923364 ~ 18923583 (+) True G271548
TU321766 lncRNA downstream 17626 18923815 ~ 18924071 (+) True G271550
XM_026942585.2 mRNA upstream 2532 18867607 ~ 18897807 (+) True nsd3
XM_026942586.2 mRNA upstream 2532 18867607 ~ 18897807 (+) False nsd3
XM_026942587.2 mRNA upstream 2532 18867607 ~ 18897807 (+) False nsd3
XM_026942610.2 mRNA upstream 112752 18760163 ~ 18787587 (+) True ggt5b
XM_026942613.2 mRNA upstream 242997 18635792 ~ 18657342 (+) False setd1ba
XM_026942458.2 mRNA downstream 42709 18948898 ~ 18958044 (+) True trim69
XM_034312680.1 mRNA downstream 76944 18983133 ~ 19010793 (+) True aak1b
XM_034312681.1 mRNA downstream 76944 18983133 ~ 19010793 (+) False aak1b
XM_034312682.1 mRNA downstream 76944 18983133 ~ 19002146 (+) False aak1b
XM_034312828.1 mRNA downstream 162017 19068206 ~ 19073060 (+) True LOC117599383
trnam-cau_45 other upstream 437147 18463121 ~ 18463192 (+) True trnam-cau_45
trnar-ccu_16 other upstream 437228 18463039 ~ 18463111 (+) True trnar-ccu_16
trnam-cau_44 other upstream 437954 18462314 ~ 18462385 (+) True trnam-cau_44
trnar-ccu_15 other upstream 438035 18462232 ~ 18462304 (+) True trnar-ccu_15
trnar-ccu_14 other upstream 440475 18459792 ~ 18459864 (+) True trnar-ccu_14
trnas-cga_2 other downstream 28695 18934884 ~ 18934965 (+) True trnas-cga_2
trnas-uga_6 other downstream 28943 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-uga_7 other downstream 29408 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_8 other downstream 29718 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_9 other downstream 30700 18936889 ~ 18936970 (+) True trnas-uga_9

Expression Profile