RNA id: XM_026942484.2


Basic Information

Item Value
RNA id XM_026942484.2
length 2652
RNA type mRNA
GC content 0.47
exon number 9
gene id phf24
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21393821 ~ 21424847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccattAGCAGCTCAGAGGAGCTTCTGCACCCAGTGACGTGCCAGTGCAGCCTCCTTTCATTCAACTTTTAATCTGGCGTTGCTTTGCATCACCTAGGCAGAGAGACCTGGAGGACTTCAGTACCGGAGCTGTCCACTCTCCACTCACACTCCACCCTTAGCGTCacgctctctcactcacacacacacacacacacacatacacacacacccttccaCACTTGAAGCAGAGCACTGACATGCCGGGTTGCAGTGCATGAAAAAGGAAGCGACAAAGTGCAAACGGAGTGCAGTTGAGTCTCAACGCAGCCATGGGCGTACTGATGTCCAAGAAGCAGCAGGTGGAGAAGGTTCAGAAATGCAATGCGGTGGTCTCAGCATTTCGCGATGGTCTGAAGAACCAGTCGAGTGTCCCTCAGGCTCAAAACAACTCCGAGAGCAAAGATGAGGCTCCGAACCAGCCAGAGTCTGATGAGTCTGGACGAAAAGAGGAGGACGGGAAACCGGGGCCATCCACTGCTCCACCCAAAGAGGAGAACAAAGCCAATCAGGAGGCCTGGGGCCGCTTACGGGATGGGAAAGGAGTAGAGCCTGAGGAGTTAAATAAAGTGCATCAGCTCACGCCACCAGCGTTTATAAGGCCGAAGAGGCAGCCGAATGACGATCAGCCCATACAGATCGAGCTCGGTCAGAGAGAGCAGccagtGAATGATGAGATGTGCGAGGTGTGCGAAGTGTGGACAGCGGACGATCTGTTCCCATGTCGGATATGTACAAGGGTGTTTCATGACGGTTGCCTGAAGGAAATTGGATACCTGCGTGCTGACACTGTACAGGAGATGAGAGAGACGGCTCACACCACCACGGGCTGGAGCTGCTACTACTGCGACAACGTAAACTTGCTCCTGACTGAAGAAGAGATGTACAGCCTAATGGAGACATTCAAGCAGTGCAAGATCATCCCAGAATCCTGCCTCGTCTCGGACGAGCTCCTTCAGTACAGGCACTTCGTGTCCAAGCAGCTGTTTGAGAAGGATCTGACAGACGATCAGGAGGAGGAGGTGCTGGCCCAGTTTGCTGCTCTTGACCCAGAGAAGAAGGGACAGATAGAGTGGTCAGATTTCCTGTATCATGAGTCGCTGTCAGTGCTGCAGAAATTTCGGACAGAGAACTCCCTGGTGCGTTTGCTCACGGCTAAAGAGCGTGACAGAGCGCGTGCAGTCTTCCAGAGTCTGGACCAGGATAAAGATGGTGTCATCACGGGTGGAGAGAGTCGGCGAGCTCAAACCTCATGGTTCCATAAGCACAGCAAAGAGCCTCAGTCCTGCAACGTCAGACTCAGGGGACTGTGTTCTCCTGCAATGAATATGGGCATCAGCCATGTAGGCCCGATTTCAGAGAGCAGTCCTGCCAGCTCAAGCAGTGACAAGAGCAGAGACAAGGCCATGGAGAAATACGacaacagGCCAGTGACATGGGACGCGTTCTTGCGTGAGAGCGCCATCTTCATCCTGGCTGCTCGACCCAACAGCAGCGCCATGCACATCCGTCTGCCCCTGTAATCCCGCCAAACCCAGGCTGGGGTCTGTGGGAAGGCAGCACAGTGTCCCCTAGACGTGTGGAAAAAATCCTGGCACTGAGAAAGGATGCGACACTCAGAGGCTGTATAAGCCATCGACGCACCCCGTCTCAAACAGAACACTATtacttctataacagcacactgaaaaaaagattttaggatttttttctgagatGTATCTCCGGCACATATTGTAAACCAACCAGTCGCAGCTCAGTGGTTGGCTGGGTGAGAAGATTGACAGCTATTTCTGTATGTAAGCTATAAGAAGCACTGCCATCTACTGTgtataaaatagcaaaaatgcACCACAGTATTAAACCATCAGCCTTTAAATATCCAGTCCTTAGTCACTTGTGATCAGAATACATGTGGGATAAAAGTGTTTGACCAGTTTTAAAGCCACTGTAAACAAGAAAACGACAAAACGACCATCAATGTAGTTGGATAGCACAAGCACTAACAGGAATGAAAGCTATctgcatatattatataatatatataagctatataaatgtgaatattaatatgtattatatatatgtgtatttattcctGAAcctcacagttttaaaaatgtcctaGTTTTAGATGCAccatgtttgttattttttttttaaaaaacgtgCTAATTATAGGGGTTAAATTTGTCACTGTCGGCCCAATCTGCCTAAATCAAAGACTAATTCTCTGGCgtgtaattaaaaattaaaaatagctaaTCTTCTAATCACTGGCTTAAATTCTCCTGAACATTCCCCAAGGtttgaatgttttaattaattttctaagtTGATTCCTGATGATAAATATGATGAATTGAACCTAAAAACTATGAAACCCTTTCCAGACTCTTAGAAGCAAATCAAGCTCACTATAACAATCTATCAGCTCTTATAAACAGTACTAAGTGGCTTCTacagtgttgttatttttttgagGGTCCAGCTCAGTGTACTTGCTTCAGTGTTGATCACTTGTTGAGTCGATTGAAGCAGTAGGTTCAAGTGAAAGTGCAACGCTCCAAATTTTGCAGCAATTACTGGAAATAAAAGCATGGCATTAACTCCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323409 lncRNA upstream 32179 21359549 ~ 21361642 (+) False LOC113544125
TU323264 lncRNA upstream 403270 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 462238 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 644174 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 656321 20716511 ~ 20737500 (+) True G272450
TU323425 lncRNA downstream 55053 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 55053 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 60304 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 63265 21488112 ~ 21492076 (+) True LOC113544190
TU323800 lncRNA downstream 537817 21962664 ~ 21962867 (+) True G273248
XM_026942774.2 mRNA upstream 32077 21359519 ~ 21361744 (+) True LOC113544125
XM_026942771.2 mRNA upstream 43998 21337235 ~ 21349823 (+) True pigo
XM_026942773.2 mRNA upstream 43998 21337235 ~ 21349823 (+) False pigo
XM_026942487.2 mRNA upstream 57883 21327106 ~ 21335938 (+) True stoml2
XM_026942821.2 mRNA upstream 198785 21188099 ~ 21195036 (+) False fam166b
XM_026942727.2 mRNA downstream 11055 21435902 ~ 21445264 (+) True prkab1a
XM_026942860.2 mRNA downstream 22388 21447235 ~ 21452073 (+) True LOC113544185
XM_026942859.2 mRNA downstream 22388 21447235 ~ 21449235 (+) False LOC113544185
XM_026910063.2 mRNA downstream 37696 21462543 ~ 21466143 (+) True LOC113523962
XM_026942513.2 mRNA downstream 43565 21468412 ~ 21473118 (+) True LOC113543961
TU322810 other upstream 850867 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 964678 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 994874 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1544995 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1563553 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 51265 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 944427 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1197581 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1700520 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 1840606 23265453 ~ 23274170 (+) False rc3h2

Expression Profile