RNA id: XM_026942488.2


Basic Information

Item Value
RNA id XM_026942488.2
length 3697
RNA type mRNA
GC content 0.49
exon number 23
gene id smarcad1b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20844325 ~ 20864250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttgccATAATATGCCAGTCGTGCGGCTCTTAGTGTGTTATAGTATTTCTCTTTTCCAGTTAAATGTCTATACAACAAAACGCGTTGTCATTTCAGTATGTCCTAAAAGGGCTTCCGTGACGCATTATCGGATTGTATTAGCATGGGCTAAAACAAATATATGCACAAAAAGAAAGGAGAGTTTAGCTTTTGCCAGGTGTATTGGCTGgtagttagcttgctagctaagctACAAATATGACATTCTTTGTTAGCTAGCCGGCTAATTTCTGTGGATATTTTAAGTTTGTTTAAACTTGAGTTTTTTCATTCGTGTCGTGAATAATATTCGCAGCAGGGGacgttttctttttcctgaatGTCCGCAGCTTAAACAATGAGGAACAAAGATGAACCCGAAATTCTTGCGGATTGTACCGTAAACACAGTACCGGAAACTCCTGAGGCCAAGCGTCCGTCTAAACCTGGTGCTGTCAAAGCCTCCGATCCTGTACTGGTGGACTCGTCCTCCGATTCGGATGTGGAGATATCAGGGAGCTCTATGATCTCAGTGGGGCCGGGGAAAACTACTGCGACTTCAACTCAGGACATGATCTCGTTCTCTGATGAAGAGGACGAAGTAACAGAGGTGAAGATGGAGACGTCGCTTCATGAAGGACAGGAACAGCAGACGGAGACCAGACACGAACATCCTTCATGCTTGAAGACATCTGGAAACGgagATACAGTGTGTAAAAGGAGGCAGGAAGAGATGTGTGATGATTCCCAGGAGAGCAACCAGAGCAGCAAGAAGAGGCGTGAGTCACTGACAGATGATTCGGCAGAGGAGGGACCTGAGCCCAGCTGGAGGGAGCAGGAGAGCATGGTGAAGAAGCTGCAGCGTAATTTCCCCCATCTCAACAAGGAGGAGCTCAGGGACGTGCTTCATGAACACAGCTGGGTCATCGAGGACGCCCTGGAGGCACTGCGCATGTTCTCTGAGCACGtgGTGGAGTGCAGCAGTGATGACTCTGACTCTGAACCCCCTCCATCTCCCgaacacaaaagcacaaatcCGACTCCGAACCCCAGCACGTCTGCAACACAGCAGGTACCCCACAGACCCCTAAatggagacagagacacacgGATGAGGAGGAGACGGCACACAAGAGAAATCCAGAAGCAAGACAGCAGCTCAGAAGACCACGCCAGTGACTTTGAGGCATCACCTGGACCCTTAGACTTGGACTCGGATTCGGACGAGGCCGACGAGAAGCTTCCCAGACTAAAGGCTCAGATCCTGGACTTCTTCCAGAAGGCCACGGTTGATGAGCTGACGCTGATCGCTGGCTGCTCTCTGAAGAAGGCTCAGAAAATCATCGAGCTGAGACCGTATCAAACATGGAACGATCTGGATGATGTCCTACACAGAGGTAATGGCCTCTCTGCGGAGCTGCTCACCGGGTGTCGAGAGGTCCTGAGGGAGCGAGAGGTGGTACAGGGGCTCATGGTCAAGTGTGAGGAAATTTCCAGAAAGATGGCCGAGTTGGTGCAGAAGGGACTGGGATCTATGAGGCAGCCACACATCCTTAACAGCACgtTCGAGCTGAAACCGTACCAGCTGATTGGCCTTAGCTGGCTGACCCTACTTCACAAGAACCAGCTGAGTGGGATCCTGGCGGATGAGATGGGTTTGGGGAAGACCATCCAAGTCATCTCGTTTCTGGCGCACTTGTATCAGGAGGGGAACCGAGGGCCTCATCTCATCACTGTGCCTTCCTCCACGCTTGATAACTGGGTCCGAGAGCTTAACCTTTGGTGCCCGAGCTTAAAAGTGCTGGTTTACTACGGGTCTGTCGAGGAACGGAAATGCATCCGCTATGAGATCCTGAATGAAGAGGTGGACTATAACATCATTGTCTCAACATACAACCTGGCCATTGGGAACTCCAGCGATCGCAGCCTGTTCCGTAAGCTCAAGCTGGAATATGCCGTGTTCGATGAAGGCCACATGCTGAAGAACATGAGCTCGCTGCGCTATCGCCACCTCATGGGCATCAATGCCAAATATCGGCTGTTGCTGACTGGAACGCCGCTGCAGAATAACCTGCTTGAGCTGATGTCTCTGCTTAACTTCATCATGCCCAACATGTTCTCCAGCAGCACCTCACAGATCGCCAAGATGTTCTCCATGAAATCCTCAGAGGAGCAGAGCAGCTTTGAGAAAGACCGGATTGCTCACGCCAAACTCATTATGAAACCCTTCATCCTGCGGCGTATCAAAAGCGAGGTCCTGAAGCAGCTGCCTGCCAAGGAGGAGCAGATCAAGTTCTGCGCCATGAGCgagaaacagcagcagctttaTGACGCTCTGTTCAGCAAGCTAAAGAGCTCCAGCAACACAGAGAAACGGGAACTGACCAATGTCATGATGCAGCTGAGGAAGATGGCCAATCACCCGCTCCTGCACCGCCAGTATTACTCCAGCAGACGCCTCTCCGCCATGAGCAGACTCATGCTCAAGGAGCCAAGTCATCGTGACTCAGACCCAGCTCTGATCGAGGAGGACATGGCGGTGATGTCAGACTTCGAGCTGCATCGTCTGTGCCAGCAGTACCCTGCGCTACAGGAGCATCAGCTGACCACAGAGCAGCTGCTGGACTCGGGGAAGCTCTACCTCCTCACACCCCTTCTGACGGACCTCAAAGAACAGGGTCACCGAGTGGCCCTCTTCAGCCAGTTCACCATGATGCTGGACATCCTGGAGGTGCTGCTCAAACACCACAAGCACAGGTACATCCGAATGGACGGCTCCACACCAATGAGTGACCGGATTGTGCTGATTGACCAGTTCAACACGGAGCAGGACATCTTTGTGTTCCTGCTGTCCACTAGAGCTGGAGGACTCGGCATCAACCTGACCTCCGCTAACGTTGTCATCCTGCACGACATCGACTGCAATCCGTACAACGACAAGCAGGCAGAGGACCGGTGTCACCGCGTCGGACAAACCAGGAATGTTAAGGTGATCAAGCTGATAAGCAAAGACTCTATAGAGGATGCCATGCTCCGCATCGGCCAGAGGAAACTCAAACTAGAGCAGGACATGACCGCCACTGAGGAAGGTGACGAGGACACCATTCCTGATGACATGGCCTCCCTCCTGAAAGCTTCACTGGGACTCTGAGAAGCAGAAATACACTGgatcatcagtgtgtgtttgtgagagtgtCCTGTTACATTTTGACTGAAGTACTGTAACACTAATAAGTATGACTGATTTGCTGTTAAAAACATGCACTGATCATGTAAGTTTATACTGGAAAACTCCAACATTCTGCAGGAAATGCAGCGTGGTTTCTGGTTCCGTTTCAGAAAGTAAGAAAGTATTGtactctttttattttctgtttgtgcCAAAtgtttaagtaataaaaaaaagtaaaaccacAGTATGCATTTTTCAACCTCAGGTTTTgtatattactactactacaactgctactacaaataataatagtaatcatcatcatcatcatcattttggTATGTGAAAGAAAAGATTATCTGGGAAAACATCTTTTGTGTAGTATATCCAATCACAAGTGCAAAAagtattttatacatatttgcatttttgcacaTGCAATGATTAATGTATACTATCCGAATTTAATTATAACTTTTATcatttaattgttattaaataatacaa

Function

GO: NA

KEGG:

id description
K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322887 lncRNA upstream 94678 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 106825 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 119131 20659603 ~ 20725194 (+) True G272448
TU322835 lncRNA upstream 184031 20565033 ~ 20660294 (+) True G272427
TU322832 lncRNA upstream 280261 20562176 ~ 20564064 (+) True G272426
TU323226 lncRNA downstream 63373 20927622 ~ 20931583 (+) True G272770
TU323264 lncRNA downstream 126094 20990343 ~ 20990551 (+) True G272803
TU323409 lncRNA downstream 495300 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 615651 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 615651 21479900 ~ 21488039 (+) True G272940
XM_034312698.1 mRNA upstream 82657 20750173 ~ 20761668 (+) True stard7
XM_034312699.1 mRNA upstream 82657 20750175 ~ 20761668 (+) False stard7
XM_034312564.1 mRNA upstream 133299 20702515 ~ 20711026 (+) True pcyox1
XM_026942866.2 mRNA upstream 146662 20684972 ~ 20697663 (+) True gmcl1
XM_034312907.1 mRNA upstream 173838 20663103 ~ 20670487 (+) True snx24
XM_026942788.2 mRNA downstream 316 20864565 ~ 20870543 (+) False ska1
XM_026942787.2 mRNA downstream 468 20864717 ~ 20870543 (+) True ska1
XM_026942450.2 mRNA downstream 7128 20871377 ~ 20880169 (+) True slc2a11l
XM_026942675.2 mRNA downstream 19778 20884027 ~ 20901267 (+) True nt5c2l1
XM_026942605.2 mRNA downstream 95813 20960062 ~ 21049972 (+) False gnaz
TU322810 other upstream 301371 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 415182 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 445378 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 995499 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1014057 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 611863 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1505025 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1758179 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2261118 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2401204 23265453 ~ 23274170 (+) False rc3h2

Expression Profile