RNA id: XM_026942493.2


Basic Information

Item Value
RNA id XM_026942493.2
length 1822
RNA type mRNA
GC content 0.44
exon number 11
gene id rassf6
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17728618 ~ 17743596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGTCGGATCGAGTTACAGCACAACACAGTCTGAATGCGCCAGTCATTAACACCTGACTGGCATGCAGGTCCTCCCTCCTATCCTCTTATCCCACACTGTCTTTAATATACAGCCTCTGCTCTTTCAGGCTGGAACTAGACTATCGTAGAGATATGGCACCCATTCCAGCGTGAGTCTGCTGACACTGGATCTGAGCCGGCGACAGaaCTGGATGGTTTCAGAAATGTCTACAGCTCAGCCACGCATGCTCGTCCACATCGGGGATGGAAGAACTTTTTCAAGgacaagaTTTCTGTCTTTACTAAACACCTACAACTGCTTTTTGAAGGACAAGACTCATCTGCAGCTCACTGTCAATGagAACACTGCTGGTCAGGTGACCCTCGAGGGATTCCTGGTCGTCTCTTGGGGCATGAAGAGACCAATCCGCCTCAAAATCCAAGATGAGAAACAGATGGTGGCGTGGAACCACTCCAAGTCTCAGGCATATTCTCCAGACGCCATCAGCCCACTTGGAAATAAGAGGGGTATGACCCGATGGGGAGAATTTGACAATCTCAATCACATTGATGAACTAGAAGAACCTTTTCAAGATGGTTCAGAGACGCTCGACAGCTGTGCTGCAGACTACAGGCAGTATGAGAGCCAGACACTGAGGGTGGGCCGAAACGAACCCATCACAGTGAGGTCCATCCTGTTCCGCACCATGAGTGACGCCTCTCTGGTGAAGAAGAGAGTGAAGACCAAGGGggcagaggagagacagagtaacagacagcaTCGCTTCTCCATTAACGGCCATTTCTATAATTATAAGACATCGATATTTACCCCATCCTATGGGACAGCAACAATCGTCTGCGCAAACAGCACAATGAGGACACAAGAGGTCATCTGGCAGCTCCTACATAAATTTAAGATAGAAAATGATCCCAGTGAATTTGCCTTGTATTGCATTCATCAGAGTGGAGaaaagaaaaagctggGCAGCTCAGACCTTCCACTTTGGGAGCGTTTTCTTCAAGGGCCATCTGAAGACATCATGAGAATCTTTCTCATGGACACTGATGAGCAGGAAGTTAGCATGGACGTAGCACAGTATGTGAATTTAGAGCTGCCTATTCTCCAACGAGTCCTGCGGAAGCTACACGAGGAGGAGAACAAAGAGATACAGCGTGTCGTCAACAAGTACAGGCACGAACACAGTCTCCTAACACAATGCCTGAACTCAAAGATGACACCAAAGACAGAGACGacagtgtgaaagaaagagTCCTGGAAGACTAAAAGCCTGGAAGtggttttttccccattcagtTCCACAAGCagatttatatatgttttataataagggttattataaaatgtaaatgaactgTCTAGCTTTATGTAATTgtactatatattttaataatgcatctgtcttactgtaatttaaaatcTCCAGGttcaattataaatattattaatagacATTATTCTAAAGGAGCAGTAACCAGGGAtaataggaggaaaaaaaagtcagaggCTACTGTAAAAACAGTGTCGTGGCAGTAAATGAACAATGAGGCTCCAGCTGGTGTGTTAGTCCAGGGCTTTGGCAGTCGTGGCCTCAGTCTGCTGCTCTGAGTAAATGCTGAACACAGTCGTTCTTCCACAGAAGTTCCATATTATTCCCATCACTATCCAAATCCAACTTTCCAGCTGAatgttatgtatttattatcaTGTACATTTATGGTTGTGTGCAAAGGCTTGTATTTCTCATGGTTTCTGattgagaaaataaagaagaaatgtacttctacaacaacaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321185 lncRNA upstream 41324 17689656 ~ 17690861 (+) True G271076
TU320948 lncRNA upstream 343206 17361945 ~ 17388979 (+) True G270913
TU320928 lncRNA upstream 439302 17277656 ~ 17292883 (+) True G270893
TU320902 lncRNA upstream 582766 17136712 ~ 17149419 (+) True G270873
TU320901 lncRNA upstream 591612 17129692 ~ 17140573 (+) True G270872
TU321215 lncRNA downstream 15954 17759550 ~ 17764529 (+) True G271102
TU321218 lncRNA downstream 26173 17769769 ~ 17773380 (+) True G271104
TU321386 lncRNA downstream 381226 18124822 ~ 18125676 (+) True G271235
TU321384 lncRNA downstream 382015 18125611 ~ 18125792 (+) False G271235
TU321496 lncRNA downstream 554526 18298122 ~ 18348384 (+) True G271340
XM_026942578.2 mRNA upstream 43189 17665665 ~ 17688996 (+) True lpar1
XM_034312272.1 mRNA upstream 43189 17665665 ~ 17688996 (+) False lpar1
XM_026942673.2 mRNA upstream 122600 17552931 ~ 17609585 (+) True LOC113544058
XM_026942456.2 mRNA downstream 7982 17751578 ~ 17758223 (+) True tmem267
XM_026942733.2 mRNA downstream 471987 18215583 ~ 18218914 (+) True sigmar1
XM_026942756.2 mRNA downstream 477172 18220768 ~ 18231104 (+) True katnal2
XM_026942757.2 mRNA downstream 477172 18220768 ~ 18231104 (+) False katnal2
XM_026942475.2 mRNA downstream 491773 18235369 ~ 18240105 (+) True hdhd2
trnam-cau_42 other upstream 642807 17089307 ~ 17089378 (+) True trnam-cau_42
trnar-ccu_13 other upstream 642886 17089227 ~ 17089299 (+) True trnar-ccu_13
trnam-cau_41 other upstream 643585 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_12 other upstream 643664 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_40 other upstream 644366 17087748 ~ 17087819 (+) True trnam-cau_40
TU321580 other downstream 660673 18404269 ~ 18407498 (+) False G271406
TU321582 other downstream 660673 18404269 ~ 18407498 (+) True G271406
trnam-cau_43 other downstream 715489 18459085 ~ 18459156 (+) True trnam-cau_43
trnar-ccu_14 other downstream 716196 18459792 ~ 18459864 (+) True trnar-ccu_14
trnar-ccu_15 other downstream 718636 18462232 ~ 18462304 (+) True trnar-ccu_15

Expression Profile