RNA id: XM_026942502.2


Basic Information

Item Value
RNA id XM_026942502.2
length 3013
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC113543956
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23342796 ~ 23345808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagaataagaggaagggagggaggaagggaagCGAGGCAGGCTGTGCTCTCTGCACCGCACCACTCTCTCCCTCATTACCATTCCAGACACTGCCTTCTCTGAGGAGAGCCCTTCGCTCTGTTTGAAATGCCAATCACCGCTGGCTGTCCTTTCATCCTCGATCACACGCACTGAAAGCACGGGTGAGCGGGAGCCCCGCAGACGCCGAGAGGATTTCCCGCTCTTCTCCATCCAACCAAAGTTactctgaaaaagaaaaatacacacgGATAACGCTGTTAAGGATTGCAGGATCTTGACTAGACTGTTTTCCGTTTGTGATCTCATCAGCGGACTAATCAGTGCTAAGAGGACAGATGGGGATCCTTTAATCAGAGTGGTAAGGACTTTActtcctctttcctttttatCATCCACTTTGACTCTGGCATCGGTCTGAGCTCCGTCACAGCTGTGCCTCTCCTGGAAAAGGCAAGAACTGGACCGAGGAAGTCAAGGTTGAAGGTGGGGGACGTTAGTGCTGGTACGTCCTGTGTGGTTACGAATTGGATTATATGGTTAATAACTGCCCTTCTTGCACTGTGTGAGATCCATCCTACCCCAGATATTAGACCTTCTGTAAACCTGTGTATAAAAGGATTCCCGTAGACTGCGGAAACGAGCGACTCGTGTTCCTGCTGAGATGGCAGACATCAGGCACGGGCATGTCTATCCCATCTGCCGGGGCCAGCAGCAGTCTGGGCAATATCTGCTGAGTTAGGCCCCCCCGAGGAAACCTTCCTCCATCCTCGTATGCCCACACACTTCTTTAACAAGATGAACACAACTGAGCTGAACCAGAGCGCTGTGACCTTTTGCCTGCTGGACATTGGTTATTCTCAGATCTTCAACACGTGCCTGCTGGAAGTCGTTGTGATCCTCTTTCTTACCGTGCTCATTATCTCCGGGAACTTAATTGTCATCTTTGTGTTTCACTGCGCACCTCTACTCAGCCACCATACCACCAGCTCTTTCATCCAGACAATGGCTTACGCTGACCTGCTGGTGGGAGTGAGCTGCCTCATCCCGTCCCTGTCTTTGCTACACCACCTGAAAGGGCTGGATGAGGAACTCACCTGCAAAGTGTTTGGTtacatggtgtgtgtgctgaagaGCGTCTCCATGGCCTCGCTGGCATGTGTTAGCGTGGACCGCTATGTGGCCATTACGCGGCCGCTGTCCTACGCAGCCTTGGTGACACCGTGCCGTCTTCGTGCCTGCATTGCCCTCATCTGGCTCTACTCCTGTCTAATCTTCCTGCCATCCTTCTTTGGCTGGGGCAAGCCCGGGTATCACGGTGATGTCGTCGAGTGGTGCTCTTCGTCCTGGGCCACCCAGCCACTCTTCACTGCCTTCATTGTGGCGGCGCTGTACGCACCTGCAGCCCTCACTGTGTGCTTCACATACGGCCACATTTTCCGGATATGCCGCCAGCACACCCGACAGATCAGCGAGCGCCGGGCACGATTTGGCCCGCAGGAAAATGAGCCGGGCGAACCACCCGGCCCTGACAAGCGCTACGCCACGGTGCTCTTCCGCATCACCAGCGTGTTCTACTTGCTGTGGCTACCATACATCATCTACTTCCTGCTAGAGAGCGCTGGAATATATCGCCATCCTGCAGCCTCCTTTTTAACCACATGGCTTGCGATCAGCAACAGCTTCTGCAACTGCCTCATCTACAGCTTGTCGAACAGTGCCTTCCGGAAAGGCCTCAAGCGCCTCTGTTTGATCTGCATAAAACGCACAGACAACAAGAAACCCCCAGGAGTGCCACCAGCTCCTCCTCGCCCGGCCTGTCATGTGTAGCGCCCAGTACGGACTGGACTGTGTCGCGTATTGTGTGTCGCCAGTTTGTCTCAGTCAGTGGAAACAGGCTTGTGTTGGCATCTGGGTGGCATTCCCAGGTTTTGTCCCAGAGTCTGGTTGTCTTCGTGACAATTCCTCGAGGCAAAGGAGTCACCTTTCACCCCGACCATCAATGTCGAAGGGGTAGTTAAGGCTGCTGTTTTGTGCAGCATTGAATAACAACTCTTTATGCAAAACATGACAAACAAGAAGGTGAAGAAAAAATGTCATGACACTGAAAGTGTAATAATCATGGGTCTAtattaatgggaaaaaaaataccctAGTTTTGTAAACTAAATGCTTACGTACATCATCTGTCAAGTCATATGACCTCTTAAATGAGCAACAACctattaacatattaacattCATCAACCTTAACCAGAGAGTGCtgatgtttcttttgtttttgggacatttttataaagtgttatcaGAGAAACCTGTGACTAATCATGTGCCACATTTCTTCCTGTTAGCTGCTTCTTTAGCGACACACGTTTTGCGGATTGTATAACTTTGTCTCTGGTCACAGGACGAACGTATGAGTggatcaaacaaacaaaccattcTGCTTGACTTCAGATTGCACAAAGATGCACTTTCTGACTGGAAGACATGGGACCTCACCGCATTATTCCCTCTctagttttgtgttgtttaaaaaatgttttaattatcaCCCATGGGTGAAGTCAATCTCAGAAGATGACCAGCTGAAGAGCCTCCTTTCTGTTGACTTTTCAGAATCACATCCCTGGATTCGCATTGAGTCATTTGATGTGATGTTTCTTCATACCATGCAGCATAAGTGTAGCACAGCTGTCTCGGCATGTTCGGTTTACTTTCCAAAATGGAGTTCTCTATCTGTAGTGCTGTACGCCTTATGGTAATATTTATCGAAAAACATTGCATCGATTATGGATCACACTTAACACGAGCCAGAGAGCTGTGTCTCTCAGCTATAAGGCAAAGACTCTAGCCTCTGTAACAACAGAACGTgagatatttattttgcaaaaacacaCCTGGTCTCCTGGTTGAAGGACACGTAaatacaaacaagcaaaaaaaaaaaaaaaattaagggtATGAttcgtgcaaaaaaaaacaaag

Function

GO: NA

KEGG:

id description
K04318 GPR21; G protein-coupled receptor 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324506 lncRNA upstream 9247 23286000 ~ 23333549 (+) True G273880
TU324488 lncRNA upstream 63007 23261046 ~ 23279789 (+) False G273865
TU324489 lncRNA upstream 63007 23270148 ~ 23279789 (+) True G273865
TU324487 lncRNA upstream 64946 23274822 ~ 23277850 (+) False G273865
TU324327 lncRNA upstream 206964 23135579 ~ 23135832 (+) True G273719
TU324528 lncRNA downstream 51000 23396808 ~ 23398531 (+) True G273900
TU324813 lncRNA downstream 329835 23675643 ~ 23677227 (+) True G274161
TU324841 lncRNA downstream 506189 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 514016 23859824 ~ 23860703 (+) True G274192
TU324848 lncRNA downstream 523046 23868854 ~ 23869197 (+) True G274193
XM_034312934.1 mRNA upstream 68143 23244560 ~ 23274653 (+) True rc3h2
XM_034312933.1 mRNA upstream 68143 23247556 ~ 23274653 (+) False rc3h2
XM_034312932.1 mRNA upstream 68143 23250984 ~ 23274653 (+) False rc3h2
XM_026942477.2 mRNA upstream 110761 23220145 ~ 23232035 (+) True si:ch211-243g18.2
XM_026942850.2 mRNA upstream 173279 23163709 ~ 23169517 (+) True ndufa8
XM_026942654.2 mRNA downstream 220906 23566714 ~ 23618521 (+) True sh2d3ca
XM_026942655.2 mRNA downstream 220907 23566715 ~ 23615457 (+) False sh2d3ca
XM_026942657.2 mRNA downstream 231717 23577525 ~ 23615457 (+) False sh2d3ca
XM_034312604.1 mRNA downstream 231717 23577525 ~ 23615457 (+) False sh2d3ca
XM_034312337.1 mRNA downstream 278329 23624137 ~ 23640347 (+) True urm1
TU324492 other upstream 68626 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 213476 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 677226 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 967921 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1863916 21476112 ~ 21478880 (+) True LOC113543995
TU324879 other downstream 757281 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 881573 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 1184170 24529978 ~ 24587552 (+) False erbin

Expression Profile