RNA id: XM_026942504.2


Basic Information

Item Value
RNA id XM_026942504.2
length 4980
RNA type mRNA
GC content 0.42
exon number 15
gene id syk
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16828162 ~ 16892899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTAAAATGAGGAAGCTCACTAAAAGTTCCACTTAAATAGAACTGCTTTTTAGGTCTGTGACAAGTTTAAGTAATTGGTCTTAGAGACTTCCAGCATTAAGTTCTAGATCATAGTCACCTGACTCGTTGGGTTTAaagattctttctttctagtGCCAGTGGTCTAAGTATTGCTTCAGCATTTGAACTATCCATTGAGTTTTTGGCCATACCACATCCTGTCAAGCTAAACAGCGCTTCAACATGGTTGCCTCAGCTCAGTCACACAGCCTCAAGTAGAAAAGAGTTGAAGACTCCATAAGTAAGGTAACGAGTGAGTAGGACTTCTTCAGGCAGTCAGAAGTGAGTGAGCAGTCATGGCAGACCAGGTGCAATTCTTGTCCTTCTTCTATGGCAACATCACTCGAGAGGAAGCTGAGGACTATCTGAGGCAAGCAGGCATGAGCAACGGTCTCTACCTGCTCCGCCAGAGCCGCAACTACCTGGGTGGATTCGCTCTGTCCGTGGCCTACAACCATCAGTGCTACCACTACACCATCGAGAGGGAGCTGAATGACACATATGCCATAGCAGGTGGAAAATCCCACCGCAGTCCAGTGGATGTGGTGGAATACCACGCACAGGAGTCAGACGGCCTGGTGTGTCTGCTGAAAAAGCCCTGCAATCGGCCTCGGGGTGTCGAGCCCAAGGTGGGGGCTTTCGAGGATCTGAAGGAGCAGCTCATCAGGCAATATGTACAGCAGACGTGGAAGCTAAAGGGTGCCTCATTGGAGCAGGCTATCATCAGTCAGAGGCCTCAGCTGGAGAAGCTGATTGCCACCACGGCACACGAGAAGATGCCCTGGTTTCACGGGACCATCACACGGGAAGACTCTGAGCCACGTTTACTCAACAACCCCCGCACCAATGGCAAGTTTCTAATCCGGCAGCGAGATAACAATGGCTCCTATGCACTCTGTCTCCTCCATCATGGCCAAGTCATGCACTATCGCATCGATAGGGACAAAGCTGGCAAACTCTCCATTCCTGATGGGAAAAAGTTTGACACTCTTTGGCAGCTGGTGGAGCATTATTCCTACAAACCTGATGGCCTGCTCCGGGTGCTGACTGACCCCTGTCCACGACCTGAAGGCCCACCTGCACTTCCTGGAAATCATCCAGAGCTGGGTGGCACAAGTGGAATTCTCTCCAGATTCAGATCCGCTTCCTTCCCCAAACCTGGTCTCAAAAAGACAACGTTAAAGAGGTGTAAAGAAAAGATCTTAGAGGTTTGCCCCAGTAAGATCACAACATATCTTCGCAAAAATAACGAGACTGATAATCCTTATGCTCGGACGGCAACAGTGCTTGCCACAGACGATTTACCCATGAGCACTGAGGTGTATGAGAGTCCATATGCTGACCCTGATGAACTACGCTCAACCACAGTGGACCGGAAAAACTTGCTCCTGGAGGATGGAGAGCTTGGCTCAGGCAATTTTGGCACAGTTCTTAGGGGCACCTACCAGATGAGGAAAACACAGAAACCGGTAGCAGTAAAGATCCTGAAGAATGGAGAAAACAATGCTGCAGTAAAGGATGAAATGCTTCGTGAGGCTCAAGTCATGCAGCAGCTTGACAACCCCTACATAGTGCGTATGATCGGCATCTGTGAGGCCGAGAACCTCATGTTGGTCATGGAGCTGGCTGAGCTCGGCCCTCTGAACAAGTATCTGCAAAAGAACAGACTTGCCATTAAAAACGTCACCGAGCTTGTGCATCAGGTCTCTATGGGGATGAAGTACCTGGAGGAGCATAACTTTGTTCACAGAGACCTGGCAGCCCGCAACGTGCTGTTAGTCACCCAGCACTATGCAAAAATCAGCGACTTTGGCCTGTCCAAAGCCCTCACCAGTGAGCAGGATTATTATGAGTCTAAAGGTCACGGTAAGTGGCCTGTGAAGTGGTATGCACCTGAATGCATGAACTTCTTCAAGTTCTCCTGTAAGAGTGACGTGTGGAGCTTCGGAGTGCTGATGTGGGAGGCTTTTTCATATGGACAGAAGCCATACAAGGGGATGAAGGGAAATGAGGTTATCCAGATGATTGAGAATGGTGAGAGGATGGCTGCTCCACCCAGCTGCCCCCCTGAGATGTACAACCTCATGATTAAATGCTGGACATACAGGGCGGAGGAGAGGCCAGGCTTTGCTGTGGTGGAGCCCAGGCTGAGAGACTACTACTATGACATTTCTCAGTGACCTGTTACCTGCTGGAAGAAAACTCAGAATGCAGAGTCATTCCCTAGGAGCTGTTTGTACATGGTTTTAAGGACTGGccaaactgatttattttacattatttacctGCAAGCTTATttgaatgttgttgttgttgttgtttttgcaaGCCAAAGTTATGATCAATGAGTGACTGCTTGTCTTGGTAATTTTTCTACATGTCTACAGACTTTACAATTAGCAATAAGCAGAAAAAGCAAAGTAGCAGTAGCAAATTAAATTATCACATCTCCATTACTgcatatttttatcattataacTAGATCGTGTACTATTCTAGTGTATTTAAACATTATCCTACTTTACCTGTACCTGTTTCATTAGTAGTATTTATCAGAAAAGGAACCTTGGCAGGAACATTCAAAGTACCTTTCACTGTTATTATACTTTATAGTTAGTGTGCAGGGGCACTGGTACACATTTTGAGTTCTCAAACAGGTTAATGCACTGAGCCAATGCACCACGAAGGATATTTGTTCTCCTTGTTGTCTCCCCAGCCCTCAAACCATCAAACGTCATGCCCTCCACCTTTTATGGCACCTCAGCTAGAGTGCTGTAAACATGACATCCTTACTAGCAAGCATGCTGTAAGGCTTGGGAATGTGGTCATGACACAGTGTCTTACAGGTGATCTGCTATTTTGCCAGGGTGAGTCAGTCAATTATTCAGAGAGCCAGCCTAGCTAGTCAACAAGTTTTTATACAAACTGAGTGTTCTGAGTGTTCTAGTCATTATGGTAGGAAGCTATTGTTCTGTTATGGAAAGGCAAAAacagggaagaactgattattttcctataacaacatgaaactgattattttcctataacaacatgtctcgaagtgtttttattcctcttataatacagcaatttgccaacaattaaatttttcatctattaaagaataatatcatattttttttatgtttattgttacatttaatgtcgtccATGAATCAAGTTAGTTCTGagtgttataaagcactgacactggagactcattccaatgctaaataaatgcatcctcacagaaaacatcaccatatcaattctaaatctgttcatgtggagtgtctgccatacaactCCCTGTGGAAGTTGTTACTGTACAAACTATAACATACTAGAAcaaaagcattaatataaacctgctgaTTTTATCCACATACTGTTGCTTTTTATCCCCTAATACAACACCTTCTCATTTGATTTACTTTTATGCTTGAAAAAAATCTGGAACAAAACCCAATAAAACAGCAATCTCAATTCAAAATGGCGGAACATCCAAAAATGCAGTGTGAAATGACACTGATTCCCTGAAGCCCTATAGCTTAGATAAAAATACATGGCATTTTAAATGGGGTTAGCTATTGTATGGAACAGCAGGTTGACGGCTAAAATTAACCACAAGAACAAGGTCTAGCAGTCTATGCAAGAATGAACAAATATCTTTCTAGTGAGCAGAATATATCCTTCTAGTCCTTTATTCTTATGCTGCTTTCCATATTGGACAGCCttctttgttatttatttctaataattatACCTGTCAGCTTCCTCTCTAATGGAATGGCAGCATTTAATGTGCCCATGATATCGAACTCAGTGGttcagtgggtagcattgcttcctcacagctccagggtcccaggttcgatactgagctcaggtgactgtctgtgtggcatttctgtgcatgtgttcGTGTGGCTTTCCGACACCTCTCAAAAACctgccagtaggtgaattggctaagataaattgcccctagtgtgcatgagtgtgtgtgatggactggtgtcccatccagggtgtattcatctttcacacccagtgttcctcggataggctccagattcaccacaactctgatcaggataaagcagttaatgaaagtgagtgagtgagtgctaTTGACTTATATCTTATAACAAACTATTggaaataacaataatgaatgaagaactACAGCAAACTTCTGTATATAGAAGCTTTGACTCATGTTTTGCTCATATGTTCATGAGAAACATTGATACCGGTAGTCACATCCAGGCAAACTGTTTCTGTATTACAGCTGGATTTTACATGATTAAGAGCACATTGATTGTCATACTCCTATATCCATTTCATTTTCCCTCATGTTATAAGCATGAATTTAAACAacaattctttttgtttttacttaatAATCTGTCAAATAAAAATGGATGATTTTTATATTCGTTAGGACTTTTATACATTCAAAAGTAGAAATCCTTAGTTAAAATCTTTTACTAATGTTGCTGTCCCAGTATCCTCATACCACTGAGAGTTAACTGGAATTTTATTAATCCTCTTCCTACTTCTTCCTACTCCTGCTATAGGCCCATTGTGTAGTGCTGGCGAGTTTACATTTTAGTTCTCTTATTTtatgtctattttattttagtctATTTACAATTTCAGAACAAACTTCTTCTCCTTATTTTTTGTATCTccttattctgttttattctctttaatcttattttattagGCCCTTctcctgttttgtgtgtttattagcttTTATCTTGTCTTATTGTGttagtttaattttattcagtattatccctttataattatttgttattaattcTATTATACAGCACTTTGGCAGCCCTTGtggtgttttaaatgtgctttataaataaagttgattTCTTCTAGGTTTTCATTA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320717 lncRNA upstream 69648 16797845 ~ 16798435 (+) True G270716
TU320608 lncRNA upstream 241725 16625984 ~ 16626358 (+) True G270626
TU320506 lncRNA upstream 290843 16576363 ~ 16577240 (+) True G270536
TU320489 lncRNA upstream 357336 16510543 ~ 16510747 (+) True G270525
TU320479 lncRNA upstream 482151 16385030 ~ 16385932 (+) True G270520
TU320859 lncRNA downstream 168082 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 194496 17087395 ~ 17087922 (+) True G270856
TU320889 lncRNA downstream 206242 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320899 lncRNA downstream 235118 17128017 ~ 17138981 (+) True G270870
TU320901 lncRNA downstream 236793 17129692 ~ 17140573 (+) True G270872
XM_034312324.1 mRNA upstream 63062 16802458 ~ 16805021 (+) True LOC117599317
XM_026941590.2 mRNA upstream 70772 16792626 ~ 16797311 (+) True macir
XM_034312274.1 mRNA upstream 70772 16792651 ~ 16797311 (+) False macir
XM_026941690.2 mRNA upstream 80448 16749087 ~ 16787635 (+) False ppip5k2
XM_026942594.2 mRNA downstream 206197 17099096 ~ 17101069 (+) True si:ch73-234b20.5
XM_026942582.2 mRNA downstream 221126 17114025 ~ 17123570 (+) True enoph1
XM_026942595.2 mRNA downstream 297056 17189955 ~ 17212123 (+) True snx30
XM_026942846.2 mRNA downstream 462200 17355099 ~ 17396817 (+) True plppr1
XM_026942673.2 mRNA downstream 660032 17552931 ~ 17609585 (+) True LOC113544058
trnam-cau_39 other upstream 239188 16628824 ~ 16628895 (+) True trnam-cau_39
trnar-ccu_10 other upstream 239269 16628742 ~ 16628814 (+) True trnar-ccu_10
trnam-cau_38 other upstream 241208 16626804 ~ 16626875 (+) True trnam-cau_38
trnam-cau_37 other upstream 241957 16626055 ~ 16626126 (+) True trnam-cau_37
trnar-ccu_9 other upstream 242038 16625973 ~ 16626045 (+) True trnar-ccu_9
trnar-ccu_11 other downstream 194769 17087668 ~ 17087740 (+) True trnar-ccu_11
trnam-cau_40 other downstream 194849 17087748 ~ 17087819 (+) True trnam-cau_40
trnar-ccu_12 other downstream 195550 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_41 other downstream 195630 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_13 other downstream 196328 17089227 ~ 17089299 (+) True trnar-ccu_13

Expression Profile