RNA id: XM_026942513.2


Basic Information

Item Value
RNA id XM_026942513.2
length 2120
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113543961
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21468412 ~ 21473118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATGATGATCCTCCGGTCTGTTCTCCTACTGGTACTTGGCATCAATGTTGGCAAGtgcaatttactttttttttaaactttgaacAGCAATGACTTAGTGCTTTTGCAGAActtacttttcctttttttaaattgatgatCCTAAATCTCATTAAAGGTTGTtaggaaaaaggaaaatttttgattgtgtgaaaatgtttgttGCAGAGGGGCCATGGTCGAGCATCAGCTTCAGCTGTCGAACCGGCAGGTAATGTGTTATGATTCTCACCGATGTCTTATTACCGCTAACCTACTTATGTGTCTTTGTACATTCAGCGACTGCCAAAacgtgaaagagagagaagcagggAGGGGGCATAGCTGGTggagacagcacacacacacacggtccgTGACGGACCCTTTTCTGTTGGCTTGTcctttttgttgagtttttcaAAGTGCCGTGTCACGCTCCACCAGTTATGTCTTTCTCTCATTACGGCAGTTGCCAAAAGTGCAGAGGCACAAATAAGTAGGCTGGCGGTAATAagcacaggtgagaatcatcatgtgTTACCTGCCGGTGGACCCACCTCCTCTCAGTCCGCAGGTGATGCTCGACCACGCCTCCGCTGCCGCATTGTTGTTTCTAGGGTCTGATCCAAATTTTGCTGGTTGAGAATTTCCAAATTTTAGGCAACCAAAGGCTCAAAAAAACTtcttaaaaatagaaatgaggAATTATTTCTTCATGCTACAGAGATAAAACATCCAAAAAGAGGGTTAAATTTTAGCAGATGTGAAGTTGATACCTGAGAATTTTCACCTTGACCAAAGTCTGGGCAGTGAACACCTTGTGGTAGAAACATGAGATCTAGGTCTGGAATCAAGTGACCAGAAGAGAATACCATGAAACATGAAACTTGGGTTTGAATTGACTTGAGgattaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagattcagCTCAGGCACTTTACTCCAGGGCACTGTGGCACTTCAGAGGTATGATCATCTGTGCCATACCTACTAGCTGGCCATTCCTAGACTATGGGAACTATGGCTGCTACTGTGGCTGGGGCGGCTCAGGCACCCCCGTTGATGACTTGGACAGATGCTGTCAGGTTCATGACAACTGTTATGGTGAAGCCTTGAAGCATGAAGCGTGCTGGGCCATCATAGAAAACCCTTACACAGTGTTCTACGGCTATGATTGTGACAAAGCCACTAAGAAAATCACCTGCAAGAGCAGTAACAACGAGTGCAAGATGTTCATCTGTGAGTGTGACCGGAAGGCTGCTGAGTGCTTTGCTGTATCTAAATACAATAAAGAGCATAAGAACCTGCCCCAGGCTCGCTGCCAAACATGACAGTCATGAACATGATAAAGGAGAAGCTCTGAAACAATTTGAAGCACATGCTCTTTGCATCATCACTTAGAAACAGTTTGCACTAAACACTCCACATCAGCATTACCTTTGCTTCAGGCACCTGCAACTTGGATGACGTGTtcttgaatatataatatttatatacgcttttttttttttttttaacgttatATATGTAATTACTTCTAATActattgtttttaaaactgcatttgtGTCTTCTTTGGGACAACTGACTCATTCGTCAGCCACAGAAGAATGTATTTGTCATCAAAACCATTTACAAAGTTCTATCCTATTTTAATAACATGACACCAATGCTTTGAAAAGTAATGTCAGCTTGGCAGTGTGATTTGTGTAATAATCCTTGACTGTACATGGAATGGATAATTAGACTATTGggtttgtttactgctgatgacAGAATCACACTTTTTGGAAATAGCATGTGGAAAATGATTATTGATATAGAAGGCTAATATTTTTCTATGATGATTGTCACAGTTTTGGTCATTACACAGTGTTCCTgcacaatttattaattaatattgtattaattgtatttGCAATTAATtctattgtcatttttaaagacaGGTAGAGAGAACCTGACACTCTGGTACACACTGCCAACAATTTTTTCTTGACgaataaagaatttttttcttttttttcttttaatttacatttggtCATAAAT

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323409 lncRNA upstream 106770 21359549 ~ 21361642 (+) False LOC113544125
TU323264 lncRNA upstream 477861 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 536829 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 718765 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 730912 20716511 ~ 20737500 (+) True G272450
TU323425 lncRNA downstream 6782 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 6782 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 12033 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 14994 21488112 ~ 21492076 (+) True LOC113544190
TU323800 lncRNA downstream 489546 21962664 ~ 21962867 (+) True G273248
XM_026910063.2 mRNA upstream 2269 21462543 ~ 21466143 (+) True LOC113523962
XM_026942860.2 mRNA upstream 16339 21447235 ~ 21452073 (+) True LOC113544185
XM_026942859.2 mRNA upstream 19177 21447235 ~ 21449235 (+) False LOC113544185
XM_026942727.2 mRNA upstream 23148 21435902 ~ 21445264 (+) True prkab1a
XM_026942484.2 mRNA upstream 43565 21393821 ~ 21424847 (+) True phf24
XM_026942559.2 mRNA downstream 2969 21476087 ~ 21478563 (+) False LOC113543995
XM_026942779.2 mRNA downstream 449433 21922551 ~ 22033997 (+) True LOC113544129
XM_034312836.1 mRNA downstream 798948 22272066 ~ 22289033 (+) True ppp2r2ab
XM_026942658.2 mRNA downstream 817963 22291081 ~ 22310553 (+) True bnip3lb
XM_026942647.2 mRNA downstream 842176 22315294 ~ 22351716 (+) True dpysl2b
TU322810 other upstream 925458 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1039269 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1069465 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1619586 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1638144 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 2994 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 896156 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1149310 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1652249 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 1792335 23265453 ~ 23274170 (+) False rc3h2

Expression Profile