RNA id: TCONS_00008806


Basic Information

Item Value
RNA id TCONS_00008806
length 659
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_004187
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29085366 ~ 29088626 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcgagctaagtGGACAAAGTGGTAACACCGGAAAAGCcctccatacagagtacTATCTATAGTCTTTTGAGCATCCAAACAGGATTTGCGCAAGTTCTCTCCATCTGCGGTGTGGGTGGAGGTGAATACAAAGTGTTTGGCACAATGGAGTTCAACATCAGGAGGACCTTAAACCGCCTCAGAGCGCCTGCAACGAGGTCCTGACCCCCGAGTATTGCATAATATTCTCATTCTTGCTTCACTCCTTCCTTGTGGGTGTTGTCGGAGGCAAGATTAGCATTTCATTAATGTACTCCCAGGTGCAGGTAAAGTGTTAGCCTGTATGCATTGTGTGGGAGATTCCCCAAACTGTCTCATTCATGGTAAAGACCCATATGGCCACATTAACCTTTTCAGTGATTAAACAATACACTTGGTACGCTAATCTATTTGTCTACTGCATGCATAACAATGCGTGTAAAATGATATCCTTAGTTAGCATGCAGggttgtataattttattatgcCAATAAAataattcttacattttttaaataaaatatgccaTTAGTGCATAGATTTTGGATGATGATAGTATAAAGAGCAAAATTCAGGTTTGTATAAAGAATTCTTCACATTTTTTTTCGATTTGCAACTGAAAATGCTTCCCTGTAAAACCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007999 lncRNA downstream 559870 28522688 ~ 28525496 (-) False XLOC_004183
TCONS_00007997 lncRNA downstream 559872 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA downstream 560213 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00008003 lncRNA downstream 560239 28522933 ~ 28525127 (-) False XLOC_004183
TCONS_00008002 lncRNA downstream 560244 28522886 ~ 28525122 (-) False XLOC_004183
TCONS_00008807 lncRNA upstream 11301 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008808 lncRNA upstream 11301 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008011 lncRNA upstream 34971 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008809 lncRNA upstream 107676 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008012 lncRNA upstream 123061 29211687 ~ 29319825 (-) False XLOC_004188
TCONS_00008008 mRNA downstream 2937 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 3191 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 174194 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008007 mRNA downstream 445868 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 470758 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008014 mRNA upstream 242516 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008015 mRNA upstream 246674 29335300 ~ 29540464 (-) True XLOC_004189
TCONS_00008018 mRNA upstream 486117 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 486117 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 486117 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008006 other downstream 489938 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 998442 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1366097 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1582046 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1582234 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 564064 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 721071 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 807746 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 856304 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 1012516 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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