Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026942578.2 |
| length | 1444 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | lpar1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 17665665 ~ 17688996 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0001946 | lymphangiogenesis | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0070915 | lysophosphatidic acid receptor activity | molecular_function |
| id | description |
|---|---|
| K04289 | LPAR1, EDG2; lysophosphatidic acid receptor 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU320948 | lncRNA | upstream | 276686 | 17361945 ~ 17388979 (+) | True | G270913 |
| TU320928 | lncRNA | upstream | 372782 | 17277656 ~ 17292883 (+) | True | G270893 |
| TU320902 | lncRNA | upstream | 516246 | 17136712 ~ 17149419 (+) | True | G270873 |
| TU320901 | lncRNA | upstream | 525092 | 17129692 ~ 17140573 (+) | True | G270872 |
| TU320899 | lncRNA | upstream | 526684 | 17128017 ~ 17138981 (+) | True | G270870 |
| TU321185 | lncRNA | downstream | 660 | 17689656 ~ 17690861 (+) | True | G271076 |
| TU321215 | lncRNA | downstream | 70554 | 17759550 ~ 17764529 (+) | True | G271102 |
| TU321218 | lncRNA | downstream | 80773 | 17769769 ~ 17773380 (+) | True | G271104 |
| TU321386 | lncRNA | downstream | 435826 | 18124822 ~ 18125676 (+) | True | G271235 |
| TU321384 | lncRNA | downstream | 436615 | 18125611 ~ 18125792 (+) | False | G271235 |
| XM_026942673.2 | mRNA | upstream | 56080 | 17552931 ~ 17609585 (+) | True | LOC113544058 |
| XM_034312655.1 | mRNA | upstream | 58665 | 17552931 ~ 17607000 (+) | False | LOC113544058 |
| XM_034312656.1 | mRNA | upstream | 98072 | 17552931 ~ 17567593 (+) | False | LOC113544058 |
| XM_026942846.2 | mRNA | upstream | 268848 | 17355099 ~ 17396817 (+) | True | plppr1 |
| XM_026942595.2 | mRNA | upstream | 453542 | 17189955 ~ 17212123 (+) | True | snx30 |
| XM_034312331.1 | mRNA | downstream | 39622 | 17728618 ~ 17743596 (+) | False | rassf6 |
| XM_026942492.2 | mRNA | downstream | 40497 | 17729493 ~ 17743596 (+) | False | rassf6 |
| XM_026942496.2 | mRNA | downstream | 40514 | 17729510 ~ 17743596 (+) | True | rassf6 |
| XM_026942494.2 | mRNA | downstream | 41971 | 17730967 ~ 17743596 (+) | False | rassf6 |
| XM_026942493.2 | mRNA | downstream | 43189 | 17732185 ~ 17743596 (+) | False | rassf6 |
| trnam-cau_42 | other | upstream | 576287 | 17089307 ~ 17089378 (+) | True | trnam-cau_42 |
| trnar-ccu_13 | other | upstream | 576366 | 17089227 ~ 17089299 (+) | True | trnar-ccu_13 |
| trnam-cau_41 | other | upstream | 577065 | 17088529 ~ 17088600 (+) | True | trnam-cau_41 |
| trnar-ccu_12 | other | upstream | 577144 | 17088449 ~ 17088521 (+) | True | trnar-ccu_12 |
| trnam-cau_40 | other | upstream | 577846 | 17087748 ~ 17087819 (+) | True | trnam-cau_40 |
| TU321580 | other | downstream | 715273 | 18404269 ~ 18407498 (+) | False | G271406 |
| TU321582 | other | downstream | 715273 | 18404269 ~ 18407498 (+) | True | G271406 |
| trnam-cau_43 | other | downstream | 770089 | 18459085 ~ 18459156 (+) | True | trnam-cau_43 |
| trnar-ccu_14 | other | downstream | 770796 | 18459792 ~ 18459864 (+) | True | trnar-ccu_14 |
| trnar-ccu_15 | other | downstream | 773236 | 18462232 ~ 18462304 (+) | True | trnar-ccu_15 |
