RNA id: XM_026942595.2


Basic Information

Item Value
RNA id XM_026942595.2
length 5775
RNA type mRNA
GC content 0.41
exon number 9
gene id snx30
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17189955 ~ 17212123 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCGGAAATGCGCGTTGCCAGTCAGCTGACAGATGTTTGCCACTCGGGTTTACGTGCTGTTCCCAGATTTTCCAACCACCTGAGGGGGCAAAGATAAAGTGATTTCGCGGCGCGTTTTATCTTTCGCTAGCACAATGAGTGCCGGCACCCCGAAATGTCTGCCCTCGTCGGGCCAGAAATCTATCCAGGACATCTGCCACCCGCTATCAGCCGAGGAGTCCGTCCTCACACCCAGCCCAGATGCAGCCAACACCAGCAGCAGCCTCGGCCACAAGGACTTGAGTCTCCCCAATGGCAATGCAGTGGACACGTCCAGCCCGGCCTCTTCATCCTCTCTGCTAAATCGCCTGCAACTGGATGACGACCTGGATGGAGAGATGCGGGATCTCTTCGTGACTGTGGACGATCCGAAGAAACACGTGTCTGCCATGGAGACGTACATAACATACAGAGTGTCTACTAAGACTACCAGAACAGAGTTTGACCTCCCTGAATATTCAGTGCGGCGACGCTACCAGGACTTTGACTGGCTGAGGAACAAGCTAGAGGACAGCCAGCCAACCCACCTTATTCCACCTCTACCTGAGAAATTTGTGATGAAAGGAGTGGTGGATCGTTTTTCAGAGGAATTTGTCGAGACTAGAAGAAAAGCTCTAGATAAGTTCCTGAAACGGGTCGCTGATCACCCTGTCCTTTCCTTCAACGAGCACTTCAATGTTTTCCTGTCTGCCAAGGATTTGAATAAAAGGCAAGGGCTGGCTCTGCTGTCCAAGATGGGTGAGTCTGTGAAGTATGTGACGGGTGGCTACAAGCTGAGAGCACGGCCGATGGAGTTTGCCACAATGGGCGACTATCTGGACCTGTTCACGCAGAAGCTGGGCACCATTGACAGGATAGCACAGAGGATCATCAAAGAGCAGTCAGAGTACTTGGTGGAGCTGAGAGAGTACGGGCCGCTCTATTCCTCATGGGCCTCCTCCGAGCAGGAGCTCCAGGAGCCGCTGGACGGCGTGGCAGGCTGCGTGGCTAACTGCTGCAGTGCTCTGGAGGAACTCACAGAGGACATGAGTGATGACTTCCTGCCTGTCCTGCGAGAATACGTCCTCTACATTGAGTCCATGAAGAATGTTTTAAAGAAGAGGGACCAAGTCCAGGCTGAGTATGAGGCGAAACTGGAGGCTGTAGCATTCCGTGAGGAAAAGAGGACAACAGTACCCACAGACGTGGAGAAGTGCCAGGACCGGGTGGAGTGCTTCAACGCCGACCTGAAGGCTGACTGGGAGCGCTGGCAGAACAACAAGCGGCAGGATTTCAGACAGCTGCTGACCGGCATGGCggacaaaaacatccagtactatgaaaagTGCCTTGCAGCATGGGAGTCCCTCATTCCACTCTTACAGGACAAACAGGAAGCCAAAGCAGAGAcgaactgagtgtgtgtatgtatcccCTGCTCTCAGGGTCATGACCTCCTGAGATCAGTGTGAGATCATGGTGGCGTGTCCTCGTGTGTTTTAGCCACTGGGGACCCAACAGTTCTGGGGAGCAAGAGGATGGGCTACACAAAGACCGTATTATATTTTGTTGCATTCGGAtttgtaaagtgtgtgtttttttttaattattatttttttttatttatgagatCCCATCTGAGCACCTCCTCCTTCCCTCTGGTCTGGAAGAACATGTAATTTTGTGTTCCACTGAAGCACAGCAAGACAAACCACAGAATGACCTGGAATTATCCTCTGAACTACTGtggacaaaaaaagagaagtacAGCAAGCGATACTTGCCATTTGccaatgattttctttttctataaatTCCGCTTGCCCTCAGCATGGTTCCCTTTTATCGCTGCCTCATTGTCGTCGTTGTCCTGCGCGTTGTGACCATGAAGCAACAGGCCAAGGATCGTCCACATTCCTCTCAccaaagtttgatgtgtttttgtttgtttctttctttgtgttatTTCAGGAACACTATGGATCTGATGCTGGGAAATGGCATGAGATCATGTccactttattatatttgtgaTTTATGTTTTGGTTCATGACTCTGAATGAAGGTTGTCTTCTCAGCCCTACATGAcctcattaaatatttatgttcaaATGCTTTTCATAATCACTCCAGGTTGTTGGGCCCAGCTTCACACAGGTTGTTGTGTTTAAATTAAAGGTAGCTTTCAAATGAAAGCTGCTATGAATATGAACTGCATTCAGACCACTCGGGGAGTAATTTCTTTTCACAGCAATGTCATTTTTCAGCAGGACATGAAACAGTAGAtcttagaatttttttttgtttgttcataatCTACTCATTTAGgcagtattaatattaataagtaCTAATTAGGATTTGCTCTGGCATTTAAACATGTTGTGTTAATATACTTTTCTAAGCAGGTGTTTGAGATCTAGGAGTTATTGTTTAGAAGCCTGGGACTTTAAGATAATTTGGTGTTTTGTTATTGTAGATAAAGCTGTTttggagaaagagacagaaaagagaactTGATAATTCTTCCCCATAGGGATGGTGTTCATAGGGCTACGTGACATCTACATAAGCAATTCAAGACAACAAGTATAAACctgcataaaaatatataaagcacatttCCACAGGAGTAAGTTGCTTTGAATATTTTGGTCACTTGTTATGTCAAGTTGATATAACACCTAAgttatttaatatgtttgttGATTTAAAGGTACATAAGCACTTCAATATTGTTGGTATAACCCTAAactttataaaggcttattaaAACAGGTGTAAATTGCCATAAGGGCTTAGTTCAATTATTATGTCATAACCCCTAAGTCATGTGATACTTTCCATACTGACTTATATGACTCTAACATGCCAAAAGTTCACTGAGTTACTGTCATCTGTCACGCTGTTCTAACACATCATAGATCAACCATATGTCAGTTGGGACatcagaatgaacaaaaaagtcTTCACGACACTTTCTGAGCAGACATATGTGACTTTGAGATACCAGAAGTTCTCCGAAGCACATAGTCATCTATCATGGTGTTCTAATGCACGTCACAACACAACCTTATGTCAATTGGACAAACGGACAAAGCAGACTTTATAAAAGTTGCTGCATATTGGATTAAGCACTTATAAATTTTGCCCTATGTTTATGTCAGGTCATAAGACAACCTTATGTCAACTGGACATCAAAATGGACAGAGACAGGTTTTTTGACAGCTGTTACATATTTGATTAAGCctttataaatctttatattgCTTTAAGTCAGTTGCCATGATGTATTTATATACACTTGTCATGTAGCCTTATAAACACAAGTACAGCGTCACTGAAAAATTACACCTGCACTCCATTTAAGCCCACCGTTTGTAATGTTGGAGAACAGGACTTTCTCAGTGTCAGTCTATGGAAACATTTGCCATCACTAAATACACACAGATTCATTGTTTAAAGTTTGAATTATTCTCCAGCTAGAAAGTTTATACATACTACACTTCACTGTTACAAACAGTCTAACGACAGTCTCAACATGGTGTATGAAGGGTGacagtgtacagtgtttctGCGCACCCTGCTACACACCACAGAGCCTCTGATAAGCTGCATGTGTTATTCACAGTTTAAACTACAGGCCGTGCCAGTCATGTCCCAGTACTCCACTGggtctgtgtttgtctctcttgtAGCTGTATGCAGCTGTTAACAGGCCTGCTGTTGTCCAAAACTAAAGAGGCTTTGCTGTTGTTATAGATTCTTACGGATCCTTATtctattgtgtgtatttttaaggGAAAGCGAATTCTCTCTTTTCAGATCTGCAATTGAGATTATAACGTGCAATGGAGAAGAATTAGACTGCTGTAATGTTAACTAAAAAATTCTCTGATGTATTTGTCTTAAGAAATTGCACTCATCTCATTGGAAAGTGCTTTATAGACCTTATATcctgtctgttttttctgtttttttcattcagagGAGTGCTTATGTTAATATTATTCCAGATTTGCAGTGTCACAGGTAGGATGTAGGTTAAGCATTAATAATGTGGCGAGATTTGCCTAAAGTTAATAACCGCTGTATGATGGCTGGAAACTTGCATCTTTGGCACCATCTGCTGGATGATAATACTGTTGTTTACCACTTTACTATATGGACACCTCTttaaggaaaactccaccctgaaacacattgaATATGtttgtattgaaatatttgtgatatgcATACCAATTCTGGCTCTAATTTGCTAGTTGATGCTGTAGTTGTGTGAAAAGTTAGTGGTCTTGTGCTTCTCTGACGTCACATGGAgacattgctagtgcagttacaatggtgcAAAAAATTTCAACCATCTCAAACACAAGCGATAATGGCCAGGTTTTGCTGTTTTAGCTCCTACAAACAAAAGTGAAAGAGCTTTTTAGCTCACTCGCTTTAAGTGGTGTGGAGACCACAAATGTTGGTTTcgaagttccagaatgcaatgcggCTATATGAAGCAGTTGTGCTGAATTATGCctcagctagttagcaatctacaAGATGACAAGCGTGTTGGTGTTATGTGTGGTGGTATTAGAATAaaagctgaagctttggaagttgatctgtttgagcagaatgtacagacgaggaggtgagagagctaaACAGACTAAAGAACTAAAGTGCCACTACTTCGCTGTCGTTAAGTAGAGATGAaacaagggctaaatcccactggcaccactatcagcaggtagacaaactgcattgtgggtaaagtaggaaactgttaaataaagtgaacatagaccaacatgttgatgaatgattaatctaaaaaaaggcaactcagaatttcataaaaaaaataaatcctggaCGCTGCTGAGGATCATAAGTTAATTATAACGATTCGTATGCAAGCTGTTCAAGGTGGAATTTTCCTTTAAGCTCATAAAGTCGAAGAATGGTTTGATTAGTGGATTTGAAATCACTGTTATACATGAAAATAACTGAGacacagactgtgtgtgcatgtttttctaGTGCAATACAAAAGATACTCCAAGTTTTAATTTCCACTCGTAACCAAAtctttctgctttcttttaatCTCTCTAAAGGTTCTGTGAAGCATCTGTGTGATAATTAAGGCAGCTACACTACACCGAGTTGTGTGTGACTTTGtgaaaaagtaatttatttgGTGATTAATACACTAGGCCTATGTAAATCAACCCACTGAATTTATCTTTTATCACTATGGATGGGGCAAATTAGAAATTCATCAGTTTTCATGAGCAACAAGCTTTCataagctttcttttttttttattttataaactctTTTTCTTGCTTGAGTCAGAAGGCAATGTGTACTAATAAGCAGCCGCTGAGGTGTGTTTGATTGTAAATAGCGTTGTCAGTCtgaattgacttttttttgtaatgttgaaATGAAACTGCTTTGTAAAACTGGCTTCTGTTTAAGAGACTCAGAAAGTCAATGTGAGGCTGAGGGGGAGAAGTTAAATATGGCAgtgaatattttgtaatattaatataatttatagacCAAAAAGGTTTTTAGCCCTCAGTTCTCCAATAATTTTCCTTTGTGTGACTtgtttactgtaacattaatgTAACTGTCAATGTTTCAATTGCAGGAAAATGACATTGATGTTTTGAAGCTATATCTTTAAcgaacatattttaaatattggaCCAATTAAAAAGGATTGTGTTAATGCTT

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17921 SNX7_30; sorting nexin-7/30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320902 lncRNA upstream 40536 17136712 ~ 17149419 (+) True G270873
TU320901 lncRNA upstream 49382 17129692 ~ 17140573 (+) True G270872
TU320899 lncRNA upstream 50974 17128017 ~ 17138981 (+) True G270870
TU320889 lncRNA upstream 88909 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320884 lncRNA upstream 102033 17087395 ~ 17087922 (+) True G270856
TU320928 lncRNA downstream 65533 17277656 ~ 17292883 (+) True G270893
TU320948 lncRNA downstream 149822 17361945 ~ 17388979 (+) True G270913
TU321185 lncRNA downstream 477533 17689656 ~ 17690861 (+) True G271076
TU321215 lncRNA downstream 547427 17759550 ~ 17764529 (+) True G271102
TU321218 lncRNA downstream 557646 17769769 ~ 17773380 (+) True G271104
XM_026942582.2 mRNA upstream 66385 17114025 ~ 17123570 (+) True enoph1
XM_026942594.2 mRNA upstream 88886 17099096 ~ 17101069 (+) True si:ch73-234b20.5
XM_026942507.2 mRNA upstream 297056 16868083 ~ 16892899 (+) False syk
XM_026942846.2 mRNA downstream 142976 17355099 ~ 17396817 (+) True plppr1
XM_026942673.2 mRNA downstream 340808 17552931 ~ 17609585 (+) True LOC113544058
XM_034312655.1 mRNA downstream 340808 17552931 ~ 17607000 (+) False LOC113544058
XM_034312656.1 mRNA downstream 340808 17552931 ~ 17567593 (+) False LOC113544058
XM_026942578.2 mRNA downstream 453542 17665665 ~ 17688996 (+) True lpar1
trnam-cau_42 other upstream 100577 17089307 ~ 17089378 (+) True trnam-cau_42
trnar-ccu_13 other upstream 100656 17089227 ~ 17089299 (+) True trnar-ccu_13
trnam-cau_41 other upstream 101355 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_12 other upstream 101434 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_40 other upstream 102136 17087748 ~ 17087819 (+) True trnam-cau_40
TU321580 other downstream 1192146 18404269 ~ 18407498 (+) False G271406
TU321582 other downstream 1192146 18404269 ~ 18407498 (+) True G271406
trnam-cau_43 other downstream 1246962 18459085 ~ 18459156 (+) True trnam-cau_43
trnar-ccu_14 other downstream 1247669 18459792 ~ 18459864 (+) True trnar-ccu_14
trnar-ccu_15 other downstream 1250109 18462232 ~ 18462304 (+) True trnar-ccu_15

Expression Profile