RNA id: XM_026942608.2


Basic Information

Item Value
RNA id XM_026942608.2
length 2414
RNA type mRNA
GC content 0.48
exon number 3
gene id gnaz
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20960062 ~ 21049972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtttgtgtgtgtgtgtgcgtgcatgcgtgcgAATGTCACTGAAGTAATCGTCATGCATTCTGCCAGGTCAGGCTTTATGAAGGCTGATGAACCCATGCCTCTGGCTGTGTGAGAAGTGTTGGCTTATGCAACGAAGAAACAGTGGGACAATCTGGTGCCCAGAAGTCTGAaaagtgtgtacgtgtgtgtacagAGCATGAGGTCTGACCAGCTGTAGGAGAAAAGAAATTTACAAAGTAAGAACTGAAGGAGTGTTGAATAACATCCGATGAACGTGCCTGGTGGAATACTGAGGATCGCTCACTTTATAACATGTGGGTGGACATAGAGGTGCTTTTGCTTGATCTACACTCTTTCCCTCAGCACTGACAGGCTCACGTTAACCATCACTTTCTGGGGGTGTCCCCTGGTATAACCCCCCAGCAACTGGGATATAAAGAGGAAACGAGGAAGTTGGTGAACCAGGGTTGGAGTCGGTCTTCTTACAGAATGTTCTGGTAGGGATAAATGCCAGTTTGTAATAGTTGATCACTAAGAAAACACACTAACTGTTGAACTTGGATCATGCAAGTAGCCTAAATCCACTTGGCAAGTTATTAGGCCTGCCTCTTCTCTTCGGACTGGGGTGGCGCCACCAAAATTGGCCATTTTTCCTTGACTTGTGCTTTGCGCTTCTTTCTAAACATCACCTCGGGACTTTGTCTACCTTTTGCCTTGTGGTTGTGGTCTTTACTTTCTGGGTgttgtggcgtgtgtgtgtgtgctttttaatAACCCATAATTGACCATGGGGTGCCGGCAGAGTTCGGAGGAAAAAGAGGCAGCCAGGCGCTCAAGGCGCATCGACCGGCACCTTCGCTCAGAGAGCCAGCGACAGAGACGCGAGATCAAACTGCTGCTCCTTGGTACCAGCAACTCGGGCAAGAGCACCATTGTCAAGCAAATGAAGATTATCCACAGTGGTGGGTTCAATCTTGAAGCCTGCAAGGAATACAAACCACTGATCCTTTACAATGCCATTGATTCGCTCACACGCATCATCCGAGCTCTCGCCACGCTCAAGATCGACTTCCACAACCCTGACCGGGCCTATGACGCTGTCCAACTCTTCGCCCTCACGGGTCCTGCTGAGAGCAAGGGAGAGATCACACCCGAGCTTCTTGGTGTAATGAAACGCCTGTGGGCTGATTCAGGAGTTCAGGAGTGTTTCCAGCGCTCCAACGAGTATCACCTTGAGGACAACACTGCCTACTACCTGAACGACCTGGACAGGATCTCGGCACCCGAGTACATCCCGACTGTGGAGGACATCCTGCGTTCCCGTGACATGACCACCGGCATCGTGGAGAACAAGTTTACCTTCAAAGAGCTCACCTTCAAGATGGTGGATGTGGGTGGGCAGCGctcagagagaaagaagtgGATCCACTGCTTCGAGGGCGTAACTGCAATTATATTCTGCGTGGAGCTGAGTGGCTATGACCTCAAGCTTTACGAAGACAACCAGACGAGTCGCATGGCAGAGAGTTTGCGTCTGTTCGACTCCATCTGCAATAACAACTGGTTCACCAACACCTCGCTCATCCTTTTCCTCAACAAGAAGGACCTGCTGGCTGAGAAGATCAAGCGCATCCCACTGACCGTCTGCTTTGCTGACTACAAGGGCCAGAACACCTATGAGGAAGCGGCCGTGTACGTGCAGCGCCAGTTTGAGGACCTGAACCGCAACAAAGAGACAAAGGAGATCTACTCACACTTCACCTGCGCCACTGATACCAGCAACATCCAGTTCGTGTTCGATGCCGTCACGGACGTGATTATCCAGAATAATCTTAAGTACATCGGCCTGTGCTAGGACCAGGGGATGGGGTTGGGTGGGGGGGGGAGAGAGACATATATCTGGCCTCCCTCACTTGATTGTTATAGTGCCATGGAACCATGATGAGAATGGGGACAGGATAGGTGCTGCCACCTTGTTCAAGTTATTAACCATGAAAAGGTAATGGTTAAGAATTTTGCAACCTTGGTATACATGTGTTTGCACTGAATTCATGaacatatagacacacacacacacacacatacacacacacacacacacacacttttgcttttgtttactCACAGAAAACTTGGAATTGATTGTCAAGTACCTGTTTGACATGGAAACACTGGTACCTTAAGAAGACAGACATCCCACCAATTCCTTTCTGGCTTACCAAACCTCTAAGATAGAGCAAGACCTCACCGTCCTCACAGTCCGAactcttctgttctgttctgtcctTTTAGGCTGTTCGATTTACAAAAATTGAGTAATGCTACTTTggaataatgtttttaacaagtCTTTGAAAGAGTTTCGTTTTTTAAATGACCATTTTAGAGAATACATGACCTACACAAGCGA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323264 lncRNA upstream 27235 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 86203 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 268139 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 280286 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 292592 20659603 ~ 20725194 (+) True G272448
TU323409 lncRNA downstream 309577 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 429928 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 429928 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 435179 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 438140 21488112 ~ 21492076 (+) True LOC113544190
XM_026942675.2 mRNA upstream 116519 20884027 ~ 20901267 (+) True nt5c2l1
XM_026942450.2 mRNA upstream 137617 20871377 ~ 20880169 (+) True slc2a11l
XM_026942788.2 mRNA upstream 147243 20864565 ~ 20870543 (+) False ska1
XM_026942787.2 mRNA upstream 147243 20864717 ~ 20870543 (+) True ska1
XM_034312293.1 mRNA upstream 153536 20844702 ~ 20864250 (+) False smarcad1b
XM_026942768.2 mRNA downstream 12713 21062685 ~ 21074114 (+) True rab36
XM_026942639.2 mRNA downstream 24681 21074653 ~ 21106826 (+) True depdc5
XM_026942802.2 mRNA downstream 58686 21108658 ~ 21115104 (+) True ywhah
XM_026942754.2 mRNA downstream 79314 21129286 ~ 21147233 (+) True slc5a1
XM_026942755.2 mRNA downstream 81584 21131556 ~ 21147233 (+) False slc5a1
TU322810 other upstream 474832 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 588643 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 618839 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1168960 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1187518 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 426140 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1319302 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1572456 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2075395 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2215481 23265453 ~ 23274170 (+) False rc3h2

Expression Profile