RNA id: XM_026942634.2


Basic Information

Item Value
RNA id XM_026942634.2
length 3434
RNA type mRNA
GC content 0.53
exon number 22
gene id sardh
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23683550 ~ 23721518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGATGTTGATTTGAGACACACCCCATGCCTCGTTGGCTGTGTAGTTCACTGCGTGAGCAAACACTGCAACTCgctgcaagtgtgtgtgagcgagtgggagtgtgtgttcctgcatgAACATTGCTTACCCtgcattcccacacacacacacacacacacacacacactgtatgcacGCTATGTCTTGACGCTGTATGGTTGCACACCCTCAGCTGTTTGAAATCTGAACACAGGCGACATTTTGGGACAGTGAGGAGAATCTGGAGGATTGAAGTCCTGCAGCACgGGGTCATGGCCTTCTTGGGGAGCGCAGTGCGGAGGGCGGTGGCGTATCGCCGACCGTTAGGGTCGCTTTACCGTCCTGCGTCTCGCTGCTACAGCGTCCAGAGTGAACACACCACAGAGAAAAGCGTCCCCTACGCCAAGATCCTCAAGCAGGAGGAAGGAATAAGAGGACCCACCAAACCTCTGCCCCGATCCGCAGACGCCGTGGTGATCGGAGGCGGCAGTCTGGGGTGTCAGACGCTCTATCACCTGTGTAAGATGGGCATGACCAATGTGGTGCTGCTGGAGAGGGACAGACTGACAGCGGGGACGACCTGGCACACTGCAggtttattgtggcagttgagGCCGAGTGATACGGAGGTGGAACTTCTGGCCCACACGAGGAACGTGATCAGCTcggagctggaggaggagacGGGCCTGGAGACGGGCTGGATCCAGAACGGAGGCCTGTTTATCGCCTCCAACAAGCAGAGACTGGACGAGTACAAGCGCCTCATGTCGTTGGGGAAGGTGTACGGGATCGAGTCGTATGTGCTCTCACCTGCAGAAACCAAAGAGCTTTACCCCCTGATGAACGTGAAGGATCTGTACGGGACTCTGTACGTCCCCAAAGACGGCACTATGGACCCTGCTGGTACCTGTACCACCCTGtccagagcagccacggcccgcGGAGCCACGGTGATAGAGAACTGTCCCGTGACGGGCATCCAGGTGAAGACGGACCACATGGGTGTGAGGAGAGTGAAGGCAGTGGAAACAGATTTTGGGACCATTGAGACCCCCTGTGTAGTGAACTGCGCAGGTGTGTGGGCCACTAAACTGGGGAAGATGGCTGGAGTGAATGTTCCTCTCATTGCTATGCATCATGCCTATGTGGTGACGGAGAGGATCGAGGGGATTCAGAACATGCCCAACGTGCGGGACCACGACGCCTCGGTCTACCTTCGTCTGCAGGGCGACGCTCTCTCTGTGGGAGGCTACGAGCAGAACCCCATCTTCTGGGACGAGGTGTCAGATAAATTTGCCTTCAGCCTGTTTGACCTGGACTGGGACGTCTTCATGCAGCACATCGAGGGAGCAGTTAACCGAGTGCCTGCTCTGGAGCGAACTGGGATCAAATCCACTGTCTGTGGACCAGAATCATTCACTGCAGATCACAAGCCGCTGATGGGCGAGGCTCCTGAGGTCAGAGGATTCTTCCTGGGATGTGGCTTCAACAGTGcaggtatgaTGCTGGGAGGAGGCTGTGGGAAGGAGCTGGCTCACTGGATCATTCACGGGCGGCCTGAGAAGGACATGTACGGTTACGACATCAGgaggtTCCACCATTCTCTAACCAACAACAACCGCTGGATCCGAGAGCGCAGTCATGAGTCCTACGCTAAGAACTACTCGGTGGTGTTTCTGTTTGATGAGCCTCTGGCCAGTCGCAACATGAGGAAGGACCCATTTCACCAGGTGCTGTTGGAACAGGGCTGTGTGTTCCAGGAGAGACACGGCTGGGAGAGACCGGGGTGGTTCAATAAAGATGGACCTGCACCggttctgGATTATGATTATTACGGTGCTTATGACATTCCGAACCATAGTGACTACAAATACAACGAGCTTCTGGGCAAAGAGTACACCTTCGACTTTCCTCCACATCACGACacgatCAGAGATGAGTGTTTAGCCTGTAGAAACGCTGTAGCCGTGTTTAACATGTCCTACTTCGGGAAGTTTTACCTCACTGGCCCCGACGCCAAGAAAGCAGCTGATTGGCTGTTCACTGCTGATGTCAACAAAGCGCCAGGCTCCACTGTGTACACCTGCATGCTGAATAAGAAGGGTGGGACTGAGGCGGATCTCACTGTCAGTCGCCTGGAGCCTGGCCCCGCCCACCTCCCACTGGCTCCTGAATTTAATGatgatgCATATTACTTGGCTGTTGGAGGTGGTGTAGCTCAGCATAACTGGAGTCACATCATGACAGTTCTGCAGGATCGCGGCTTTAACTGCACACTGATCGATCACTCTGAGGACATGGGCATGCTCAGTATCCAGGGACCCAagagtcgGGATTTGCTGCAGGAGGTTGTAGATACGGATCTGAGTAACGAAGCCTTTCCTTTCTCCACACACAAAATAGTGACAGCTGCTGGACACAAGGTACGAGCCATGCGTCTGTCCTTCGTCGGAGAGCTCGGCTGGGAGCTGCACATCCCTAAAGACTCCTGCCTGCCAGTTTATCAGGCCGTCATGGCCGCCGGCGCCAAATACGGCGTCAAAAACGCAGCTTACAGAGCCATCGACTCGCTCAGCATCGAGAAAGgTTACAGACATTGGCACGCTGACCTGCGCCCTGATGACACGCCTCTGGAGGCGGGGCTTGCGTTCACCTGTAAGATGAAATCGTCCATTCCCTTCCTGGGACGTCAAGCTCTGGAGACGCAGAAGGCTGAAGGCCTGCGCAGGAGAATCGTCTGCTTCACCATTGACGAgaAAGTGCCCATGTTTGGATTGGAGGCCATTTTCCGTAACGGCGTTCCGGTTGGACACTTGCGGCGTGCTGAGTTCGGCTACGCCATCAACAAAACCATCGGCTACGGATACGTCCGCAATCCAGATGGAGGGGTGGTGAGCCCAGATTTCATCCGCAGTGGTGAGTTCACTCTAGAGAGAATGGGCGTGGTCTATAAGGCTAAAGCTCATCTGAAGTCGCCGTTTGACCCGGAAAACAAGAGAGTGAAGGGAATCTACAGCTCAGAGTGAACATCTGAAAACTGTCCCGCTCTCATCCTTGCTGCAGCGCTGAAGGTAAACCGGAGGTCCAGGGACGACGatgaagctgctgctgctgttacacacacacacacacacacacacactctcaagaCTTTTCCAGCAGAACTAAACACTCTCTCGGTTCTCCCTTCATGTGTAGTGCGAGTTGGACACGTCTGATACAGAAGccgtttttttgtgtgtgtgtttttattgtttgtatCATTTATTGTGACAGTTTAAATTTTGTGTACTTACAATTTAATCACATTTGACATCTTCAGCACTAAAGTCATCTTATAAATTGTTCTAAtctgacaaataaaatgtatttgcaaGGAGTTTgagcaataaaatgaaaatgtactgaAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006546 glycine catabolic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004047 aminomethyltransferase activity molecular_function

KEGG:

id description
K00314 SARDH; sarcosine dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324813 lncRNA upstream 6323 23675643 ~ 23677227 (+) True G274161
TU324528 lncRNA upstream 285019 23396808 ~ 23398531 (+) True G273900
TU324506 lncRNA upstream 350001 23286000 ~ 23333549 (+) True G273880
TU324488 lncRNA upstream 403761 23261046 ~ 23279789 (+) False G273865
TU324841 lncRNA downstream 130479 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 138306 23859824 ~ 23860703 (+) True G274192
TU324848 lncRNA downstream 147336 23868854 ~ 23869197 (+) True G274193
TU324880 lncRNA downstream 216515 23938033 ~ 23940111 (+) False cdc37l1
TU324897 lncRNA downstream 224098 23945616 ~ 23946507 (+) True G274239
XM_026942864.2 mRNA upstream 6920 23662619 ~ 23676630 (+) True cercam
XM_034312337.1 mRNA upstream 43203 23624137 ~ 23640347 (+) True urm1
XM_026942519.2 mRNA upstream 43203 23624137 ~ 23640347 (+) False urm1
XM_026942655.2 mRNA upstream 68093 23566715 ~ 23615457 (+) False sh2d3ca
XM_026942637.2 mRNA downstream 33599 23755117 ~ 23777033 (+) True fam163ba
XM_026942790.2 mRNA downstream 59838 23781356 ~ 23786783 (+) True swi5
XM_034312902.1 mRNA downstream 67914 23789432 ~ 23809829 (+) True slc27a4
XM_026942804.2 mRNA downstream 94158 23815676 ~ 23831525 (+) True ptgdsa
XM_034312903.1 mRNA downstream 113649 23835167 ~ 23845395 (+) True ambp
TU324491 other upstream 323047 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 409380 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 554230 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 1017980 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 1308675 22369274 ~ 22374875 (+) False tmem230a
TU324879 other downstream 381571 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 505863 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 808460 24529978 ~ 24587552 (+) False erbin

Expression Profile